| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5248 |
|---|
| Symbol | |
|---|
| ID | 4453216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | - |
|---|
| Start bp | 2319601 |
|---|
| End bp | 2320866 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639697304 |
|---|
| Product | porin |
|---|
| Protein accession | YP_838874 |
|---|
| Protein GI | 116693341 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAGAAG CTGCCTGTCA ACAGCATTCC TTTCCTTCCC GCCATCAATG GCGGGGTTTC
TCGGAGCAAC TGATGAACAA GCAACTGATC GCAGCGCCGC TGCTGCTCTC GCTCGCGAGT
GTCGCCGCCG CGCAAAGCTC CGTCACGCTG TACGGCATCG TCGATGCGGG CGTGACCTAT
CGCAGCAACG AACGGGTCGG CTCGGCGGGC GCGTACACCG GGCATTCGAG CGTCGGGCTC
ACGACCGGCA ACCTGTCCGG CAGCCGGTGG GGCATCAAGG GTTCCGAGGA TCTCGGCGGC
GGGATGCGCG CGCTGTTCGT TCTCGAGAAC GGCTTCGACA TCACCAACGG CACGTCCGGC
CAGGGCGGCC GCCAGTTCGG CCGGCAGGCG TTCGTCGGCG TCGGCAGCGA CCGCTACGGC
ACGGTCACGC TCGGCCGCCA GTACACGTCG CTCGACGATT TCGTGAGCCC GGTCGGCCCG
TCGTCGTTCA TCGGCGGCTT CGGCGCGCAC CCGGGCGACA TCGACGATCT CGACCAGACC
GCGCGCGTCG ACAGCTCGAT CAAGTACACG AGCGCGAACT ACTCGGGCTT CACGTTCGGC
GCGCTGTACG GCTTCGGCGG CCAGCCGGGC AGCATGAAGC AGCGCAACAC GTGGAGCGTC
GGCGCCGCAT ACGCGGCCGG CCCGCTGCGT GTGGGCGTCG GCTACGAGCG CTCGGACAAC
AGCAAGAAGG GCGCGACCGA CCCGACGGCG GGCAAGTGGC AGAGCACCGA CGACGGGCTG
TTCAATTCGT CGATCAACGA AGGCTATGCG AGCGCGCAGT CGCAGCAGGT GATCGCGACC
GGCGCGACGT ACGACTTCGG CCCGGCCGTC GTCGGCGTGA ACTACAGCAA CGTGCAGTAC
CGCGGCGGCG CGCAGTCGTT GTTCAGCGGC CATGCGACGT TCAACGTCGC GGGCGTGTTC
ACGCGCTGGA ACGTGCAGCC GCAGACGCAG CTGTTCGCGG GCTACAGCTA CACGCGCGGC
AGCGACGTCG ACGGTATCGA CAACCGCGCG CAGTATCACA ACGTCACGCT CGGCGCGGTC
TACGACCTGT CGAAGCGCAC CAGCGTGTAC CTGCTCGGCG CGTACCAGCA TGCGTCCGGC
ACGACGCTCG ACGCGCTCGG CCGGCCGGTG GCCGCGACTG CGTCGGTGTC CGACAAGGCG
AACGGCCATT CGTCCGATTC GCGGTCGCAG GCGATCGTGA GCCTCGGGCT GCGCCAGAAG
TTCTGA
|
|---|
| Protein sequence | MEEAACQQHS FPSRHQWRGF SEQLMNKQLI AAPLLLSLAS VAAAQSSVTL YGIVDAGVTY
RSNERVGSAG AYTGHSSVGL TTGNLSGSRW GIKGSEDLGG GMRALFVLEN GFDITNGTSG
QGGRQFGRQA FVGVGSDRYG TVTLGRQYTS LDDFVSPVGP SSFIGGFGAH PGDIDDLDQT
ARVDSSIKYT SANYSGFTFG ALYGFGGQPG SMKQRNTWSV GAAYAAGPLR VGVGYERSDN
SKKGATDPTA GKWQSTDDGL FNSSINEGYA SAQSQQVIAT GATYDFGPAV VGVNYSNVQY
RGGAQSLFSG HATFNVAGVF TRWNVQPQTQ LFAGYSYTRG SDVDGIDNRA QYHNVTLGAV
YDLSKRTSVY LLGAYQHASG TTLDALGRPV AATASVSDKA NGHSSDSRSQ AIVSLGLRQK
F
|
|---|
| |