| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3988 |
|---|
| Symbol | |
|---|
| ID | 4452613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 876650 |
|---|
| End bp | 878089 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639696046 |
|---|
| Product | selenocysteine synthase |
|---|
| Protein accession | YP_837617 |
|---|
| Protein GI | 116692084 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] |
|---|
| TIGRFAM ID | [TIGR00474] seryl-tRNA(sec) selenium transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGAAC CGGGTGTGAA TGAACTGAAT GCCGTGCTGG CGCGTGTGCC GTCGGTCGAG
CGCGTGCTGT CGTCGGCGCC GCTGCAGCCG CTCGTCGCCG ACTATGGCCG CACGCGCGTG
CTCAACGCCG TGCGCGCCGA ACTGGAACGC TGGCGCACGG CCGCGCAGCG CGATCCCGCG
GCGGCCGAGC CGCTCGACGA GCCGCGCATT GCCGCCGCCG TCGCGCGTAC CCTGGCCGCG
CAGAATGCGG GCGCCGTGCG CACCGTGTTC AACCTGACCG GCACCGTGCT GCACACGAAT
CTCGGACGCG CGCTGTTGCC CGACGACGCG GTGCGCGCGG TGGTCGACGT GCTCACGCGG
CCCGTCAACC TCGAGTTCGA TCTCGCTACC GGCCGTCGCG GCGATCGCGA CGACCTGATC
GACGCTCTGC TGTGCGAACT GACGGGCGCG GAAGCCGCGA CCGTCGTCAA CAACAATGCG
GCGGCCGTGC TGCTGACGCT GTCGGCGCTC GCGACGAAGC GGGAAGTCGT CGTGTCGCGC
GGCGAGCTGG TCGAGATCGG CGGCGCATTC CGCATTCCCG ACATCATGAG CCGCGCCGGC
GCGAAGCTGC GCGAGGTCGG CACGACCAAC CGCACGCATC TGCGCGACTA CGCGGATGCG
ATCGGTCCGC GCACGGCGCT GCTGATGAAG GTGCACTGCA GCAACTACGC GATCAGCGGC
TTCACGAAGG AGGCGACGCT CGCCGAACTC GCGCCGCTCG CGCGCGAGCA CGGCGTGCCG
GTGGCCGTCG ATCTCGGCAG CGGCACGCTG GCCGACCTGT CGCAATGGGG GCTGCCGCAC
GAGACGACCG TGCAGGAAAC CGTCGCCGCC GGCGCAAACG TTGTCACGTT CAGCGGCGAC
AAGCTGCTCG GCGGCCCGCA GGCCGGCTTG ATCGTCGGCG ATCGCGCGCT CATCGCGAAG
ATCAAGAAGC ATCCGCTCAA GCGTGCGCTG CGCGTCGGCA AGCTGACGCT CGCGGCGCTC
GAACCGGTGC TGCGCCTGTA TCAGTCGCCC GAATTCCTGC GCGAGCGCCT CACGACGCTG
CGCTTGCTGA CGCGCCCGCA GCGCGAGATC GCAGAAGCGG CCGAACGGGT GCGGCCTGCG
TTGCAGGCTG CGTTCGGCAG CGGTTTCGAC GTGACGGTCG AACCGATGTT CAGCCAGATC
GGCAGCGGCG CGCTGCCGGT CGACCAGTTG CCGAGCGCCG GGCTCGTGGT GCGCTCGGCG
GACGGCAAGC GCAGCGGCCG CGCGCTCGCA CAGCTCGAGA AACGGCTGCG CGAATGGCCG
CGCCCGGTGA TCGGCCGCGT GGCCGACAAC GCGCTGCGGC TCGATCTGCG CTGCCTCGAA
GTAGCCGACG AAGCGGCGTT CGTCGCGCAA TGCGTGCCGC TCGCGGGGCC CGCTGCATGA
|
|---|
| Protein sequence | MTEPGVNELN AVLARVPSVE RVLSSAPLQP LVADYGRTRV LNAVRAELER WRTAAQRDPA
AAEPLDEPRI AAAVARTLAA QNAGAVRTVF NLTGTVLHTN LGRALLPDDA VRAVVDVLTR
PVNLEFDLAT GRRGDRDDLI DALLCELTGA EAATVVNNNA AAVLLTLSAL ATKREVVVSR
GELVEIGGAF RIPDIMSRAG AKLREVGTTN RTHLRDYADA IGPRTALLMK VHCSNYAISG
FTKEATLAEL APLAREHGVP VAVDLGSGTL ADLSQWGLPH ETTVQETVAA GANVVTFSGD
KLLGGPQAGL IVGDRALIAK IKKHPLKRAL RVGKLTLAAL EPVLRLYQSP EFLRERLTTL
RLLTRPQREI AEAAERVRPA LQAAFGSGFD VTVEPMFSQI GSGALPVDQL PSAGLVVRSA
DGKRSGRALA QLEKRLREWP RPVIGRVADN ALRLDLRCLE VADEAAFVAQ CVPLAGPAA
|
|---|
| |