| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3554 |
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| Symbol | |
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| ID | 4452823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008543 |
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| Strand | + |
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| Start bp | 397216 |
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| End bp | 399219 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639695613 |
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| Product | RNase II stability modulator |
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| Protein accession | YP_837186 |
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| Protein GI | 116691653 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.108406 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGACG AAAACGATAG CGCGGTGCTC GAGGCGCATG TCGGTACGCG CAGCCCCTGC
TGGCGTCTCG GCAGCGACAG CAATGCGCTC GAACTGGCCG CGGTCCGCGG CCTGACCAAC
GTCGCGGTCG CGCTGACGGT CGAGCAGGCC GCGCGCATCC GCGCGCTGAC CGGCGTCACG
TCGCACCTCG TGCTCGACAT CGTGCTGTTC GGCAACCCGG TCAGCCTCCA TCTCGTCGGC
AGGAAGGTCA ATACGGTCGA CTGGGCCGGC ACGGCGTCCG CCTATTGCGA TACCGAGTCC
GTCGCCGGTG ACCTGGCGCA CGGGCTCGCG TTCGCCGAGC AGGTCGTGTC CGAAGTGAAT
TCACTCGTCG TGATCCTCGA CCGCAACGGG ATGGTGCAGC GCTTCAACCG CCTGTGCGAG
GAAGTGACGG GCAAGCGCGA GGTCGACGTG ATCGGCCGCA GCGCGTTCGA GCTGTTCATG
AGCCCCGAGC AGGGCGCGCA GTCGCGCAGC AACATCACGG GCTTCTTCGC GAGCAACCAG
TCGTTCGCGG TCGAGCGCTA CATCAACACG GTCAACGGGC CGCGCCTGTT CCAGTTCCGC
AACAAGTTCG TGCAGAGCGG CAGCGGCGTC GACGAGCAGT ACCTGATCTG CTCGGGCATC
GACATCACCG AGGAGCGCAA CGCGCAGCAG CGGCTCACCG AGCTCGCGAA CACCGACGTG
CTCACCGGGC TGCCGAACCG CCATGCGATC AGCGAGCGCA TCCACGCGGC GATCGCGGAG
GAAGACGCCA ATACGCGCGG CCACGTCGGC ATCCTGTTCC TCGATCTCGA CAACTTCAAG
CGCGTCAACG ATCACTACGG GCACATCACC GGCGACCGGC TGCTGCAGGA CGTGTCGGCG
ATCATCAGCG GCTGCCTGCC GTCCGGCGCG ACGCTCGCGC GGCTCGGCGG CGACGAATTC
CTCGTGCTGT TCGAACACGC CACGCGGCCG CTGCTCGAAG CGACCGCGCA GATCATCCTC
GAACGGCTGC GCACGCCGAT CCATCTCGGA CTGATGGAGG TCTACACGAG CTGTTCGATC
GGCATCGCGA TGCATCCGCA GCACGGCGAT TCGCTCGAGA CGCTGATCCG CAGCGCCGAC
ACCGCGATGT ACGTCGCGAA GGAAGAGGGC AAGCATACGT ATCGCGTGTT CTCGCTGGAG
ATGAACCAGA AGGTCGCGAA GTACATGTGG CTCGACACGA ACCTGCGCAA GGCGCTCGAG
GAAGAGCAGT TCGTGCTGCA CTACCAGCCG GTCGTCGACA TCGCGACGGG CGACGTGCAT
GCCGTCGAGG CGCTGATCCG CTGGCAGTCG CCCGATCGCG GGCTCGTCGC GCCGGTCGAG
TTCATCCGCT TCGCGGAAGA GTCGGGGCTG ATCGCGCCGC TCGGGCGCTG GGTGATGCGC
ACCGCGGCCG CGCAGGCGGC CGCGTGGAAG GCGAAGGGGC TCGGCGTCCG GATCGCGGTG
AACCTGTCCG CGCGGCAGTT GCAGGACATG AACATCGTGC ACCAGTTCGC GTCGATTCTC
GACGGCGCGG GGCTGAAGCC CGGCCTGCTC GACATCGAGC TGACCGAGAG CTGCTTCATC
GAGGACGAGG AGGCGGCCAA CGGGCTGATG CGGCAGTTCC GCCAGCTCGG CGCGGAGATC
CATCTCGACG ATTTCGGCAC CGGCTATTCG TCGCTGTCGC AGTTGTCGCG CCTGCCGCTC
GACGCGATCA AGCTCGACCG CACCTTCATC ACGGCGATCG ACCGCAATCC GCGCTCGCAG
GCGCTGGTGC GCTCGGTCGT GTCGCTCGCG AAGGCGCTGA ATTTCGCGGT GGTCGCGGAA
GGCGTCGAAA CGCATGCGGA AGCCGAATTC CTCAAGCAGC TCGACGTCGA TCACGCGCAG
GGCTACTACT ACGCGCGGCC GATGCCGGCG CAGGCGTTCG AGGCGTGGCT CGCGGAGACG
AGAAAGCTCA GGCTGATCGC CTGA
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| Protein sequence | MDDENDSAVL EAHVGTRSPC WRLGSDSNAL ELAAVRGLTN VAVALTVEQA ARIRALTGVT
SHLVLDIVLF GNPVSLHLVG RKVNTVDWAG TASAYCDTES VAGDLAHGLA FAEQVVSEVN
SLVVILDRNG MVQRFNRLCE EVTGKREVDV IGRSAFELFM SPEQGAQSRS NITGFFASNQ
SFAVERYINT VNGPRLFQFR NKFVQSGSGV DEQYLICSGI DITEERNAQQ RLTELANTDV
LTGLPNRHAI SERIHAAIAE EDANTRGHVG ILFLDLDNFK RVNDHYGHIT GDRLLQDVSA
IISGCLPSGA TLARLGGDEF LVLFEHATRP LLEATAQIIL ERLRTPIHLG LMEVYTSCSI
GIAMHPQHGD SLETLIRSAD TAMYVAKEEG KHTYRVFSLE MNQKVAKYMW LDTNLRKALE
EEQFVLHYQP VVDIATGDVH AVEALIRWQS PDRGLVAPVE FIRFAEESGL IAPLGRWVMR
TAAAQAAAWK AKGLGVRIAV NLSARQLQDM NIVHQFASIL DGAGLKPGLL DIELTESCFI
EDEEAANGLM RQFRQLGAEI HLDDFGTGYS SLSQLSRLPL DAIKLDRTFI TAIDRNPRSQ
ALVRSVVSLA KALNFAVVAE GVETHAEAEF LKQLDVDHAQ GYYYARPMPA QAFEAWLAET
RKLRLIA
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