| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_2997 |
|---|
| Symbol | |
|---|
| ID | 4450539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | + |
|---|
| Start bp | 3308380 |
|---|
| End bp | 3309534 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639695063 |
|---|
| Product | spermidine/putrescine ABC transporter ATPase subunit |
|---|
| Protein accession | YP_836638 |
|---|
| Protein GI | 116691015 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.412177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCGA TACCCTCTTC CGCTGCTGCA CGCCAGACCC AACCGGCCGC CGCGCCCCGT
ACGCAAAACG ACGCATTCGT GCGCATCGAA AACGTCGTGA AGAAATTCGG CGACAGCACG
GCCGTCGACA ACGTGAACCT GACGATCGCC AAGAACGAGC TGTTCGCGCT GCTCGGCAGC
TCGGGCTGCG GCAAGTCCAC GCTGCTGCGC ATGCTCGCCG GGCTGGAAAC GGCCACCTCC
GGCAAGATCT TCGTCGACGG CGAGGATCTC GCGTCGCTGC CGCCGTACCG CCGCCCGGTC
AACATGATGT TCCAGTCGTA CGCGCTGTTC CCGCACATGA CGGTCGAATC GAACGTCGCG
TTCGGCCTGA AGCAGGAAGG CACGCCGAAA AACGAGATCA AGGAGCGCGT GGCCGACGCG
CTCGCGCTCG TGCAGATGAG CAAGTATGCG AAGCGCAAGC CGCACCAGCT GTCCGGCGGC
CAGCAGCAGC GCGTCGCGCT GGCCCGCTCG CTGGTGAAGC GCCCAAAGCT GCTGCTGCTC
GACGAGCCGA TGTCCGCGCT CGACAAGAAG ATTCGCCAGA AGACCCAGCT CGAACTCGTG
AACATCATCG AGAAGGTCGA CGTGACCTGC GTGATGGTCA CGCACGACCA GGAAGAGGCG
ATGACGATGG CGAGCCGCCT CGCGGTGATG AGCGAGGGCA AGATCGTGCA GATCGGCTCG
CCCGGCGAAG TCTACGAATA CCCGAACAGC CGCTTCTCCG CCGAATTCAT CGGCTCGACC
AACCTGTTCG AGGGGCGCGT GGTCGAGGAC GAGCCCGATC ACATCTTCGT CGAAAGCGAC
GACCTCGAGA CGCGCATGTA CGTGAGCCAC GGCGTGACCG GCCCGCTCGG GATGCCGGTC
GGCATCTCGG TGCGCCCGGA GCGCATCCAC GTATCGCGCG AGAAGCCGGG CTCGAAGCAC
AACTGGGCGC GCGGCGTCGT CACCGACATC GCGTACATGG GCAGCTATTC GCTGTACCAC
GTGCGTCTGC CGAGCGGCAA GACGGTGGTG TCGAACCTGT CAAGCTCGCA CCTGATGAAC
GACGGCGCAC CGGCGTGGAA CGACGACGTG TTCGTGTCGT GGTCGCCGGC CAGCGGCGTC
GTGCTGACGC AGTGA
|
|---|
| Protein sequence | MQSIPSSAAA RQTQPAAAPR TQNDAFVRIE NVVKKFGDST AVDNVNLTIA KNELFALLGS
SGCGKSTLLR MLAGLETATS GKIFVDGEDL ASLPPYRRPV NMMFQSYALF PHMTVESNVA
FGLKQEGTPK NEIKERVADA LALVQMSKYA KRKPHQLSGG QQQRVALARS LVKRPKLLLL
DEPMSALDKK IRQKTQLELV NIIEKVDVTC VMVTHDQEEA MTMASRLAVM SEGKIVQIGS
PGEVYEYPNS RFSAEFIGST NLFEGRVVED EPDHIFVESD DLETRMYVSH GVTGPLGMPV
GISVRPERIH VSREKPGSKH NWARGVVTDI AYMGSYSLYH VRLPSGKTVV SNLSSSHLMN
DGAPAWNDDV FVSWSPASGV VLTQ
|
|---|
| |