Gene Bcen2424_1942 details

Gene Information

• Locus tag: Bcen2424_1942
• Symbol: ispF
• ID: 4450460
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia cenocepacia HI2424
• Kingdom: Bacteria
• Replicon accession: NC_008542
• Strand: -
• Start bp: 2157890
• End bp: 2158375
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 639693989
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_835586
• Protein GI: 116689963
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 0.510568
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTTCA GAATCGGACA AGGCTATGAC GTGCACCAGC TCGTCGAAGG GCGCCCCCTC 
ATCATCGGCG GCGTGACGAT TCCGTACGAG CGCGGCCTGC TCGGCCACTC GGACGCGGAC 
GTGCTGCTGC ATGCGATCAC CGACGCGCTG TTCGGCGCGG CGGCGCTCGG CGACATCGGC 
CGCCATTTCT CCGACACGGA CGCGGCGTTC AAGGGCGCGG ACAGCCGCGT GCTGCTGCGC 
GCGTGCGCCG AGCGCGTGAA GGCGGCCGGC TTCACGATCC AGAACGTCGA CAGCACCGTG 
ATCGCGCAGG CGCCGAAGCT CGCGCCGCAT ATCGACGGGA TGCGTGCGAA CATCGCGGCG 
GATCTCGGGC TGCCGCTCGA GCGCGTGAAC GTGAAGGCGA AGACCAACGA GAAGCTCGGC 
TATCTCGGTC GCGGCGAGGG GATCGAGGCG CAGGCCGCCG CGCTGCTGGT CAAGCAGGGC 
GGCTGA 

 

Protein sequence

MDFRIGQGYD VHQLVEGRPL IIGGVTIPYE RGLLGHSDAD VLLHAITDAL FGAAALGDIG 
RHFSDTDAAF KGADSRVLLR ACAERVKAAG FTIQNVDSTV IAQAPKLAPH IDGMRANIAA 
DLGLPLERVN VKAKTNEKLG YLGRGEGIEA QAAALLVKQG G