| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3681 |
|---|
| Symbol | |
|---|
| ID | 7861023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 4095181 |
|---|
| End bp | 4098030 |
|---|
| Gene Length | 2850 bp |
|---|
| Protein Length | 949 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 643867784 |
|---|
| Product | alpha-L-rhamnosidase |
|---|
| Protein accession | YP_002883685 |
|---|
| Protein GI | 229822159 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.697625 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.500239 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG ACGCCCGCTT CGCGCCCGCG GCACGCTGGA TCTGGGACGA CGGCGAGCCG
TCGCCCCGCA ACGCCTGGCG GTGCTTCCGG CGCACGGTCA CGATCGACGA CGACGAGCCG
GACGCCCGGC TCCGCGTCAC CGCCGACACC CGGTACGTCG CGTACGTCAA CGGCGTCCGG
GTCGGGCACG GACCGGTGCG CGGTTTCCCG GAGCACTGGT TCGTCGACGA CTGGGAGGTC
GGGCACCTGC TCCGGCCCGG GGCGAACGTC GTCGCCGTCC TCGTCCGGCA CGACGGCGTC
GCGACGTTCT CGTCGCTGCG CGCTCGCGGT GGGCTGCTCG CCCAGCTCGA CCTCCCGGCG
TCGTCGACCC ACGTCGTGAG CGACCCGAGC TGGCAGGTCG CGACGCACGC CGGGTTCGAC
GCACGCTCCC CCCGCATCTG CCCGCAGCTC GCGTTCGTCG AGGTCGTGGA CGGCGCGTGG
CAGCCCACGT GGACGACGGA CGTCGCCGAG CCGGCGACCG ACGACGGCTG GGCGCCGGCG
ACGGTCGTCG GCGAGCCGGG CCAGGGGCCG TGGTCGCGCC TGGTCGCACG GGACGTGCCC
GCGCTCGCGG AGGAGCTCGT GCGCCCCGTC CGGGTCGGGT CGCTGGCGTT CGTGCGCGCC
GCGCCGACGA GCTGGACCCT CGACGCCCGC GCCCTGTTCG ACCCCAGCTC CGAGCATCAC
GCGAACCCCA GCTCCTACGT CGGGTTCCTG CTCACCGCGA TCCGCGTGCA CCGACCCGCG
CGGGTGCGGA TCGCCCTGCC GCTGGCGACG TCCAACGGCC GCGTGTCCGG AGTGGCCCTC
GACGGCGCGT GGACCCCGGT CTCGGACCTC GCCGCGGGGC ACGCGGACCT GCGGACGCTC
GACGTCGACC TCGCCTCGGG CGACCACTGG CTCGCGCTCG ACGTCTCCGC GTACGACCAC
GGGTACCCGG TGCCGGTGAT GCTCGAGGCG CTCGACGGCG CCGACGTCGC GCTCGTCCAC
CCCACTCAGG GCGACGCCGC GACGCCGTGG GTCGCGCTGG GCCCGGTCGG CGCACCCGAC
CCGGCGTTCG AGCGGCCGCT CGCGCACCCC GCCCTGGAAC GCATGACGCC GACGCCCGAG
ACGCGGGGCG CCGTCGTCGA GGCGACAGCT GCCCGCGAGC TCGGTGCCTG GCCGCACGCG
GCGCGCACCG TCCCGGCCGA GCTGGCGTTC CCGGCCAGCC TGTACGGCGT CGTCGTGCAC
CCGAGCGAGC GGGACGCCGT CGTCGTCCCC AGCGCCGTGC AGGCGCTCGC CGGGGGCGGG
TCGGCGGCCG TGCCGCACCG GCCCGGGCGC GACACGGAGC TCGTGCTCGA TCTCGGCGTC
GAGGCGTCCG GCTTCGTCGA GCTGGAGCTC ACCGCACCGC CCGGCGTGGT CGTCGACGTC
TACGGCTTCG AGTACCTCCG CGACGGCTAC CGCGAGGAGA CGACCGGCAT GGAGAACGCG
CTGCGGTACA CCACGCGCAC CGGCCGTCAG CGGCACGTCT CGCCGGTGCG GCGCGGACTG
CGGTATCTGC AGCTCGTCGT GCGCCGGCCC GACGACGCCG CGGGGCCGGT CGTGCTGCAC
GACGTCGCCG TACGCAGCGC CCACTACCCG ATGCCGCGGA CGGGCGAGTT CTCGTGCAGC
GACACCCGGC TCGACGCGAT CTGGGAGATG TCGCGGCGGA CCGTCGTGGC CTGCGCGGAG
GACACGTTCG TCGACTGCCC CGCCTACGAG CAGGCGTACT GGGTGGGTGA CGCGTACTCG
AGCGCACGGT TCGCGTCGGC GCTCGCCGAC GTCGGCCCGC TCGTGGAACG CTGCCTGCGG
CTCGTGCCGG GCTCGCGCGG CCAGACCCCG CTGCTCGGGT CCCAGGTGCC GTCCGGCTGG
ACGAACGTGA TCCCGGCGTG GACGTTCTTC TGGGTGCTGG CGTGCGAGGA GCATGCCGTG
CGGTCGGGCG ACCCAGGCTT CGCGCGGGAC CTCGCCCCCG ACGTCGTGGC GGCGCTCGAC
GCGTTCGCCG AGCACCTCGA CGAGCGCTCA CTGCTGGCGA TCGACGCGTG GAACCTCCTC
GACTGGGCGC CGATGGACCA GCCGAACTCC GGCGTCGTCG CGCACCAGAA CTGCCTGTAC
GTGATGGCGC TCGACGGCGC GGCTCGGCTC GCGGACGCCG TCGGCCTGGA CGTGGGGGAG
CGGTTGCGGG CGCGGGCGTC GGCCGTGCGG GCGGCGATCG CGGAGCACCT GTGGTCCCCC
GAGCGGGAGG CGTACCTCGA CGCGATCCAC GCTGACGGCC GCCGGTCCGA CGTCGTCAGC
GTGCAGACGC AGCTGTTCGC TCTGCTCGCC GGGGTCGGCG ACGATTCCCG CCTGGCCCGG
CTGACGTCGC TCGTCGTGGA CCCGCCTCAC GACCTCGTGC AGATCGGCAG CCCGTGGATG
TCGATCTTCC GGTACGACGC CCTCGTCGCG GCCGGGCGCG CGGACGTGGC GCTCGCCGAC
CTGCGCCGGG ACTACGGCGG GATGCTCGAC GCCGGCGCGG TCACCTGCTG GGAGATGTTC
CCGGCGCCGG ACCGCGCATC GCTGACCCGC AGCCACTGCC ACGCCTGGTC GGCGGCGCCG
GCCGCGTTCC TTCCGAACGT CGTGCTGGGC GTGCGCCTGG ACGGTCCTCG CCGCGTGGTC
GTCGACCCCC AGCCGCTCGG CCTGGACTGG GCGCGCGGCG CGATCCCGCT CCCCGGCGGC
GGGCGGGTGG AGGTGGCGTG GGAGCGGCGC GCCGACGGCA CGCTCGACGT GCGCGTCGAC
GCGCCCGACG GCGTCGAGGT GGGGCGCTGA
|
|---|
| Protein sequence | MSDDARFAPA ARWIWDDGEP SPRNAWRCFR RTVTIDDDEP DARLRVTADT RYVAYVNGVR
VGHGPVRGFP EHWFVDDWEV GHLLRPGANV VAVLVRHDGV ATFSSLRARG GLLAQLDLPA
SSTHVVSDPS WQVATHAGFD ARSPRICPQL AFVEVVDGAW QPTWTTDVAE PATDDGWAPA
TVVGEPGQGP WSRLVARDVP ALAEELVRPV RVGSLAFVRA APTSWTLDAR ALFDPSSEHH
ANPSSYVGFL LTAIRVHRPA RVRIALPLAT SNGRVSGVAL DGAWTPVSDL AAGHADLRTL
DVDLASGDHW LALDVSAYDH GYPVPVMLEA LDGADVALVH PTQGDAATPW VALGPVGAPD
PAFERPLAHP ALERMTPTPE TRGAVVEATA ARELGAWPHA ARTVPAELAF PASLYGVVVH
PSERDAVVVP SAVQALAGGG SAAVPHRPGR DTELVLDLGV EASGFVELEL TAPPGVVVDV
YGFEYLRDGY REETTGMENA LRYTTRTGRQ RHVSPVRRGL RYLQLVVRRP DDAAGPVVLH
DVAVRSAHYP MPRTGEFSCS DTRLDAIWEM SRRTVVACAE DTFVDCPAYE QAYWVGDAYS
SARFASALAD VGPLVERCLR LVPGSRGQTP LLGSQVPSGW TNVIPAWTFF WVLACEEHAV
RSGDPGFARD LAPDVVAALD AFAEHLDERS LLAIDAWNLL DWAPMDQPNS GVVAHQNCLY
VMALDGAARL ADAVGLDVGE RLRARASAVR AAIAEHLWSP EREAYLDAIH ADGRRSDVVS
VQTQLFALLA GVGDDSRLAR LTSLVVDPPH DLVQIGSPWM SIFRYDALVA AGRADVALAD
LRRDYGGMLD AGAVTCWEMF PAPDRASLTR SHCHAWSAAP AAFLPNVVLG VRLDGPRRVV
VDPQPLGLDW ARGAIPLPGG GRVEVAWERR ADGTLDVRVD APDGVEVGR
|
|---|
| |