| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2952 |
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| Symbol | sdhA |
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| ID | 7861371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beutenbergia cavernae DSM 12333 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012669 |
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| Strand | + |
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| Start bp | 3293291 |
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| End bp | 3295093 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643867050 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_002882959 |
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| Protein GI | 229821433 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.090106 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000187391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCAGACGC ACAGCTACGA CGTCGTCATC GTGGGCGCCG GGGGCGCCGG GATGCGAGCC
GCGCTGGAGT CGTCCTCACG CGCCCGCACC GCCGTCCTCA CCAAGCTCTA CCCCACCCGC
TCCCACACCG GTGCCGCCCA GGGCGGCATG TGCGCCGCCC TCGCGAACGT CGAGGAGGAC
AACTGGGAGT GGCACACGTT CGACACCGTC AAGGGCGGCG ACTACCTGGT CGACCAGGAC
GCGGCCGAGG TCATGGCGAA GGAGGCCATC GACGCGGTCC TCGACCTGGA GAAGATGGGC
CTGCCGTTCA ACCGGACGCC CGACGGGAAG ATCGACCAGC GCCGGTTCGG CGGCCACACC
CGCAACCACG GCGACGCCCC TGTGCGCCGT TCCTGCTACG CCGCCGACCG CACGGGCCAC
ATGATCCTGC AGACCCTGTA CCAGCAGTGC GTCAAGGCCG GCGTGGAGTT CTTCAACGAG
TTCTACGCGC TCGACCTCCT GCTGACCGCC GACCCGCAGG ATCCCGACGG CGACCCGCAG
GTGGCCGGCG TCGTCGCCTA CGAGCTCGCC ACCGGTGAGA TCCACGTGGT GCGCGCCAAG
TCGGTGGTCT TCGCCACGGG CGGCGCCGGC AAGGTGTACA AGACGACGTC GAACGCCCAC
ACGCTGACCG GCGACGGCAT GGCGATCGCC TACCGCCGCG GGCTCCCGCT CGAGGACATG
GAGTTCTTCC AGTTCCACCC CACGGGCCTC GCGGGCCTCG GCATCCTGCT CTCGGAGGCC
GCCCGCGGCG AGGGCGCGAT CCTGCGCAAC AGCGACGGCG AACGCTTCAT GGAGCGGTAC
GCGCCGACGC TGAAGGACCT CGCGCCTCGC GACGTCGTCG CCCGCGCGAT GGCGAACGAG
GTGCGGGAGG GCCGCGGCGC CGGCCCGAAC AAGGACTACG TGCTGCTCGA CCTCACGCAC
CTCGAGCCGG CGCACATCGA CGCGAAGCTC CCCGACATCA CCGAGTTCGC CCGCACCTAC
CTCGGCGTCG AGCCGTACAC GGAACCCGTG CCGGTGTACC CGACGGCGCA CTACGCCATG
GGTGGCATGC CCACCACCGT GGAGGGCGAG GTGCTGCGCA ACAACACCGA CATCGTCCCC
GGGCTGTACG CCGCGGGCGA GGTGGCGTGC GTGAGCGTCC ACGGCGCGAA CCGGCTCGGC
ACGAACTCGC TGCTCGACAT CAACGTGTTC GGCAAGCGGG CCGGCATCAC CGCCGCCGAG
TACGCGGCCG GCGCGACGCT CGCCGAGCTC CCCGACGACC CGGCCGGGCG CGTCGTCGCC
CAGCTCGAGG CGATGCGGAC GCGCCCCGTC GGCGAGAAGG TGGCCGACCT GCGCCGGGCG
CTGCAGGAGA CGATGGACGT GAACGCGCAG GTGTTCCGCA CGGAGGCCAG CCTCAAGCAG
GCTCTGGTCG ACATCCAGCA GCTCCAGGAG CGCTACGGCC ACGTCGCCGT GCAGGACAAG
GGCCGGCGGT ACAACCTCGA CCTGCTCGAG GCCGCCGAGC TCGGCTTCCT GCTGGACCTC
GCCGAGGTCG TCGTGACCGG CGCGCTCGCC CGCAACGAGT CGCGCGGCGG TCACTACCGC
GAGGACTACC CGCAGCGGGA CGACACGAAC TTCATGCGCC ACACGATGGC CTACCGGGTC
GCGACGACCG GTGCCGAGGG TGCCGAGGCG GTCGACGCCG CCGGGATCGG CCCGCACGAG
GTGCGCCTCG ACTACAAGCC CGTCACGTTG ACCCGGTACC AGCCGATGGA GCGTAAGTTC
TGA
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| Protein sequence | MQTHSYDVVI VGAGGAGMRA ALESSSRART AVLTKLYPTR SHTGAAQGGM CAALANVEED
NWEWHTFDTV KGGDYLVDQD AAEVMAKEAI DAVLDLEKMG LPFNRTPDGK IDQRRFGGHT
RNHGDAPVRR SCYAADRTGH MILQTLYQQC VKAGVEFFNE FYALDLLLTA DPQDPDGDPQ
VAGVVAYELA TGEIHVVRAK SVVFATGGAG KVYKTTSNAH TLTGDGMAIA YRRGLPLEDM
EFFQFHPTGL AGLGILLSEA ARGEGAILRN SDGERFMERY APTLKDLAPR DVVARAMANE
VREGRGAGPN KDYVLLDLTH LEPAHIDAKL PDITEFARTY LGVEPYTEPV PVYPTAHYAM
GGMPTTVEGE VLRNNTDIVP GLYAAGEVAC VSVHGANRLG TNSLLDINVF GKRAGITAAE
YAAGATLAEL PDDPAGRVVA QLEAMRTRPV GEKVADLRRA LQETMDVNAQ VFRTEASLKQ
ALVDIQQLQE RYGHVAVQDK GRRYNLDLLE AAELGFLLDL AEVVVTGALA RNESRGGHYR
EDYPQRDDTN FMRHTMAYRV ATTGAEGAEA VDAAGIGPHE VRLDYKPVTL TRYQPMERKF
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