| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1397 |
|---|
| Symbol | |
|---|
| ID | 7861697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 1589061 |
|---|
| End bp | 1590764 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643865481 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_002881418 |
|---|
| Protein GI | 229819892 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.75572 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCGAC ACCTCGATCC CCGAACGTCC AGGCGACGTC CTCGCCTCGC CGCGCTCGGC
GCCACGGCGG CCGCGCTCGC CCTCGTCCTG ACGGCCTGCT CCTCCGGGGG CGGGGCCTCA
GACGACGGCG ACGACGGTGC GGCCGGCGGT GAGCAGGAGG TGCTCACCGT CCACGCGAAC
ACGGCGCCGA CGTACCAGGA GAACTTCAAC CCCCTCTCAC CGTCCGTCCT CCCCGGGACG
CGTGGCCTGG TCTACGAGCC GCTCATCGCG TACACGCCGA TGAAGCCGGG CGAGGGCGAG
CCGTGGCTCG CCGAGAGCAT GGAGTTCAAC GAGGACGGCA CCCAGGTCAC GTTCACGCTG
CGCGAGGGCG TGCAGTGGAA CGACGAGGAA CCGTTCACCG CTGACGACGT CGTCTTCACG
TTCCTCCTGT ACCGCGACAA CCCCGCGACG AACACCGGCG CGCTGCCCGT CACCGACGCC
GAGGCGACGG ACGAGCGGAC GGCCGTCATC ACGTTCGGCG AGACGATGTA CTCGCGCGCC
CCGCAGCTCG GGAACACGAT CACGCTGCCC GAGCACGTCT TCGCCGAGCA GGACCCCGTC
GAGTTCCTGA ACGCCGACCC CGTGGGCACC GGGCCGTACG TCGTCGACCG GTTCACGGAC
CAGGTGTACG ACTTCGCGCA GAACCCGAAC TACTGGGACG CCGACAACTA CGAGGTCGAG
ACGATCTCGT TCCCTGCCTC CAGCGCCGAC ACGTTCAACG TCGCACTCAG CAGGAACGAG
CTGCAGTGGT CCGGCGGGTT CGTCGCGAAC ATCGACGACA TCTACGTCAG CAAGGACGCC
GAGCACAACA AGTACTGGTA CCCCGGCGAC GGCATCGTGG GCCTGTTCGT CAACCAGCAG
CGCGCACCGA TGAACGACGT CGCGTTCCGG CAGGCGCTCT CGCTCGCGGT CGACCGCGAC
CAGCTGTCCT CCACGGCGAT GCAGAGCTAC ACGCCGCCGG CGCACCCGAC CGGTCTGCCG
CTCCCGGCGT TCGACGCGAT GATGGACCCG GACCTGGCGG ACGCCGAGTA CGTCCGTGAC
GTCGACGAGG CGAACTCGAT CCTCGACGAC GCGGGCTACG CGATGGGTGC CGACGGCGTC
CGGACCGCGC CCGACGGCAC GCCGCTCAGC TTCGACCTGA TCATCCCGTC CGACTGGACC
GACTGGGTCA CGATCGCCGG CCTCCTCCAG GAGCAGCTCG CGGAGATCGG CGTCCAGCTC
GCTCCGCAGG GTGTCGCGTT CCAGTCCTGG GTCGACCAGC GCAACGGCGG CAACTACGAC
CTGACCCTCG GGTCCGTCGC GGCCGGCACC GCCCCGTACT TCATGTACCG GTCGATGATG
AGCTCGGAGT TCGAGGTGGC CGAGGGCGAG GCCGCCGTCA ACAACTTCGC GCGGTGGTAC
GACGCCGAGT CGGACGCGTT CTTCGACGCC TACGAGTCCA CGAACGACCC CGAGGTCCAG
CTCGAGGCGA TCCAGGGACT CGAGAACATC GTCGTCGAGG AGCTGCCGAT CATCCCGCTG
CTGCAGAGCC CGAACTGGTT CCAGTACCGG ACCGAGTTCT TCACGGGTTG GCCCAGCGAG
GAAGACCCCT ACGCGCTCGG GGCGCCGTAC ATGTTCCCCG ACAACCTGCT CGTCGTGCGT
GCGCTGGAGC CCGCAGGCGA GTGA
|
|---|
| Protein sequence | MTRHLDPRTS RRRPRLAALG ATAAALALVL TACSSGGGAS DDGDDGAAGG EQEVLTVHAN
TAPTYQENFN PLSPSVLPGT RGLVYEPLIA YTPMKPGEGE PWLAESMEFN EDGTQVTFTL
REGVQWNDEE PFTADDVVFT FLLYRDNPAT NTGALPVTDA EATDERTAVI TFGETMYSRA
PQLGNTITLP EHVFAEQDPV EFLNADPVGT GPYVVDRFTD QVYDFAQNPN YWDADNYEVE
TISFPASSAD TFNVALSRNE LQWSGGFVAN IDDIYVSKDA EHNKYWYPGD GIVGLFVNQQ
RAPMNDVAFR QALSLAVDRD QLSSTAMQSY TPPAHPTGLP LPAFDAMMDP DLADAEYVRD
VDEANSILDD AGYAMGADGV RTAPDGTPLS FDLIIPSDWT DWVTIAGLLQ EQLAEIGVQL
APQGVAFQSW VDQRNGGNYD LTLGSVAAGT APYFMYRSMM SSEFEVAEGE AAVNNFARWY
DAESDAFFDA YESTNDPEVQ LEAIQGLENI VVEELPIIPL LQSPNWFQYR TEFFTGWPSE
EDPYALGAPY MFPDNLLVVR ALEPAGE
|
|---|
| |