| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_0542 |
|---|
| Symbol | |
|---|
| ID | 7857907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 597512 |
|---|
| End bp | 598144 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643864621 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_002880567 |
|---|
| Protein GI | 229819041 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.669667 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCG AGCTCTCCAC CTACCATCGG GGAGTCGCCG CGGCCAACCG TGCGGCGATC
CTCGACGCGG CCATGGCCCT GTTCCTCGCG TCCGGCTACG ACCGCACCTC GCTGGCGAGC
GTCGCCGAGA GCGCGGGGGT GTCCAAGGCG ACGCTGTTCA AGCAGTTCCC GACGAAGGCG
GAGCTCTTCG AGGCGACGGT GCTCGCGGCG GGCGGCACAC CTGGTGGGGA GCTCGTGGAT
CCGCCGCCGG GAGACTTCCA TGGCGGCCTG GTCACACTGG GCCTCGCGTA CGCGGAGCTG
CTGACACGCC CCGGGATGGA GGACCTGATC CGCGTCGTGA TCGCCGAGGC CCCGCGGTTC
CCGGAGCTGC GCGAGCAGAC GTTCGACTTC GGCACGCTGC CCGTGCTCGC GGCGCTGGGG
CGATATCTCC GGGCGGAGCA CGCCGCGGGC ACTGCCGACG TGGACGACCC GGACGCGGCC
TCGGCGCAGT TCCTCGGGAT GATCTCCACC GTCGTCTTCT GGCCTCGCCT CGTCCACGGC
AACTGGTCCC TCAGCGACGA GGAGACGCTT CGCGTGGTGG ACGACGCGGC CCGGACGATG
GCCGCGCGCT ACGGCGTGGC CGTGGGCAGC TGA
|
|---|
| Protein sequence | MPRELSTYHR GVAAANRAAI LDAAMALFLA SGYDRTSLAS VAESAGVSKA TLFKQFPTKA
ELFEATVLAA GGTPGGELVD PPPGDFHGGL VTLGLAYAEL LTRPGMEDLI RVVIAEAPRF
PELREQTFDF GTLPVLAALG RYLRAEHAAG TADVDDPDAA SAQFLGMIST VVFWPRLVHG
NWSLSDEETL RVVDDAARTM AARYGVAVGS
|
|---|
| |