Gene Bcav_0310 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_0310 
Symbol 
ID7859002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp333104 
End bp334435 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content69% 
IMG OID643864386 
Productextracellular solute-binding protein family 1 
Protein accessionYP_002880336 
Protein GI229818810 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGATC AGCGACGATC TCTTCCCCCC ATGAGCAGGC GTTCCTTCCT CGGTGGAGCC 
GCGGCGGCCG GTGCGCTGAC GCTCGGCGCC TGCGGCTCTC CACGCTCCGC CCGCGACCTG
ACCTTCCTCA TCAACCACAC CAACCAGGAG GCCCAGCTCT TCGACGAGCA GATCGGGGTC
TTCCTCGACG GCGACCCGGA GCACCGCATC ACGCTCCAGA ACATCGCGAG CGGCCCGCAG
TTCTACACGC GGCTGCGCAC CGTCTCCGTG ACGAACGACC TGCCGGACGT CTGGTACGCC
CGCACGCTCG ACACCGCGTT CAACGTGTCC AACTCGTGGC AGCTGCCCCT CGACGAGTTC
ATCCGCGACG ACCCCGACGC CGCTGTCGAC GACATCTGGG CCGCGCAGGT GCGGCAGATG
TCCGTCGACG ACGTGCAGTA CTCGATGCCG TACGACCTGT CCTGCTACTG CATCTACTAC
AACCGCACCG CCTTCGAGGA GAAGGGGATC GACCGTCCCG ACGACGAGAG CTGGACCTGG
GACGAGCTCT TCGAGATCGC CGAGGCGTTC ACCGAGAGCT CGGGCGGGCG GCAGACGCGG
TGGGGCTTCT ACTTCTCGCT CGGCACCTGG TTCTTCGACG GGGTGTTCCG GTCCAACGGC
GGCGGGCTCT TCGAGGACGA CGGCCGGACG GTCGTCATCG CGTCCGAGGA GAACATCGCC
ACGCTCGACA CCTTCTACGC GATGATGGAC AGCGGCGTGG CGGCCCAGCC GCAGACGCTC
GGGGCCGCCG TCGACCCGTT CATCTCCGGT CTGGTCGCCA TGGCCGTCAA CGGTTCGTGG
GCGACGGCGC AGACCCGGGA CCAGATCGGC GACCGGTTCG CGTGGGACGT CCTCAAGCTC
CCGAAGGGCA CGACCGGACG GCGCGAGGTG GCGACGGCCG GCGGGGCGTG GGGCATCTCC
CGCGACTCGG CCAACCCGGA GCTCGCCTGG GAGTTCATCC GCTTCCTCTC CGACACCGAA
CGCCTCAACC TCTTCATCTC CGAGCCGCTG CGCGGCATCC CCGGGCGGAT CTCGGCGGCC
GAGGACGAGG AGGCCATGAA CGCCTCGGCC GGACTGCCGC CGGAGAGCTT CCGCATCCTG
CGCCAGATGC TCGTGGAGGA CGCGTACGAG GTGACGTGGC CGCCGTTCTG GGCCGAGTTC
GAGACGATCT GGAACAACCG CGCCACCGCG CTGAACGGCG GCGCGCGCCC GCGCGACGTC
CTCACCCAGA TCGACAGCGA CGTCCGCGCG GCCTCCGCGC GGTTCTTCGG ATCCGAAGGA
GGAGACCGAT GA
 
Protein sequence
MPDQRRSLPP MSRRSFLGGA AAAGALTLGA CGSPRSARDL TFLINHTNQE AQLFDEQIGV 
FLDGDPEHRI TLQNIASGPQ FYTRLRTVSV TNDLPDVWYA RTLDTAFNVS NSWQLPLDEF
IRDDPDAAVD DIWAAQVRQM SVDDVQYSMP YDLSCYCIYY NRTAFEEKGI DRPDDESWTW
DELFEIAEAF TESSGGRQTR WGFYFSLGTW FFDGVFRSNG GGLFEDDGRT VVIASEENIA
TLDTFYAMMD SGVAAQPQTL GAAVDPFISG LVAMAVNGSW ATAQTRDQIG DRFAWDVLKL
PKGTTGRREV ATAGGAWGIS RDSANPELAW EFIRFLSDTE RLNLFISEPL RGIPGRISAA
EDEEAMNASA GLPPESFRIL RQMLVEDAYE VTWPPFWAEF ETIWNNRATA LNGGARPRDV
LTQIDSDVRA ASARFFGSEG GDR