Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_0174 |
Symbol | |
ID | 7862046 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | - |
Start bp | 179627 |
End bp | 182167 |
Gene Length | 2541 bp |
Protein Length | 846 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 643864251 |
Product | polysaccharide lyase 8 alpha-helical |
Protein accession | YP_002880201 |
Protein GI | 229818675 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAGCTCT CCCGTCGCCA GGTGCTCGCG ATGGTCCCGG CCGGGGCCCT GCTCGCGATC GCCGCCCCGA TGCGCGCCTA CGCCGACACC CCGGCGGACC ACGCCCGCCT GCTCGCCAAC GCCGTCGCCA TCTTCGCGGG CACCGCGGAG TCCAACGCCC GCCCGGAAGC GGCGGCGAAG CTGGCGGCCA TCCAGACGAC GGCGCGCACG CGGCTCGCGG AGCTCGACGC CGCCGGGCCG GGCGAGCTGT TCGCCGGTGT GCCCCTCGGC ACGAGCGACC CGAACCTCAA CACGTCGTTC CTCCGGTTGT ACGAGATTGC TCTGGCGACA TGTACGCCGG GCGTCGCGTC CGAGCTCGTG GGCAGCACGG AGGTCCGCCG GCGCGTGATC GACGGCCTCG TCTGGCTGCA CGAGAACTAC TACGGCGACC AGGCGGCCGG CTACTACGGC AACTGGTTCA CGTGGGAGAT CGGCATCTCG GCGTCCGTCA GCAAGACGCT GGTGCTGCTC GACGACGACG TCGCCGCGTA CCGTCCGGAG CTCGTCGGCA CCTACGTCGC CTCGATGGAC GCGTACCTGC GCAACGGCGT CGGCGGCGAC GTCAACCTCG ACTCCCGCTT CCACACCGGC GCGAACCTCG CCGACATCAC CACGAACCGC GTCCTGCAGG GCGCGTTGAC GGCCGACGAC GCCCGCGTCA GCAAGGCGAT CGCCGACCAG TCCACGGTGT TCGCCACGAT CGACCCGTAC GACCTGCAGC ACGGGAACAC CGACGGCTAC TACGCCGACG GGTCGTTCAT CCAGCACCAC TCGGTCGCGT ACACCGGCTC GTACGGGCGC ACGCTCCTGA CCCGCGTCGT CCAGACCGTC AAGCTGCTCG ACGGGACGGC CGCCGCGCCC GGCACCGAGC TGGCCGACGT CGTCCACGGC TGGGTACGCG ACGGCTTCGC GCCGGTCATC GTCGAGGGCT GGATGGCGGA GATCGTCAAG GGGCGCGCGG TCTCGCGCAC GGGCACGGGG TACGCCGACG TCGCGACGGT GGTGGAGGCG GTCGTCGACC TCGCCGACTA CGCGAGCGCC GAGAACGCCC TGGCGCTGCG CGGCTACGTG CGCTACCTCG AGGCAGCGTC GCCGACGCCG GCCGACCCGA CGCGCTTCGT CTCGCCGGTG AGCATCGTGC GGTACGCGGA CATCCTCGCC GACGACGCGC TGCCGACGCA GGACCTCAAC CCCGCGGAGC GCACCGTCGC GTTCAACGCG ATGGACCGCA CCGTGCACCG GCGGACGGGG TACACGTTCG CGCTCGCGCG CAGCTCCGAC CGGATCAGCC GGTACGAGTA CATGAACGGC GAGAACCTCA TGCCCTGGTT CCAGGGCGAC GGCATGCACT ACCTCTACCT CGCCGGCCAG GACCAGACGC AGGCGTTCGG CGTCGACTTC TTCACGACCG TCTCGCCGTA CCGCCTGCCC GGCACCACGG TGCCGGTCGA GGAGCGGCAG ACCATCCCGG AGCTGTACGG GCGGTTCTGG TACGAGAACC CGGACCATCC GCTGGGGTTC ACGTCGTCGT CGGAGTCGCA GAACACCTAC GTCTACTTCC CGCGCGGCAC GAACGCCTTC TCGGGTGGCG CGACGCTCGG CACGTACGGC GTCGCCGGCA TGGTGCTGTC CGACGACGTC CCGTACGTCG ACGCGCAGGC CGGCGTCCTC CCGGACGACT TCGTGGTGTA CGCCAACGCG CGGGCCACGA AGTCGTGGTT CCTGCTCGAC GACGAGATCG TCGTGCTCGC CGCAGACGTG CACGACCCCC ACCGCCGCGA CGTCGTCACG ACCCTCGACA GCCGGATCGC GGCGCCGGGC GACGGCGTGG TCGTCACCGG TGCGCGTCGA GGCGGACGCG CCTGGTCGCC GGACGACGGC CCCGAGCGGC TGGAGTGGCT GCGGTGGGAG AACCCCGCAC AGGGGGTGGT CGTCGGCTAC GCGCTGCTCG ACGCCGGCCC GGTCGCCGTC ACCCTCGAGG ACGTGACGCG CAGCCGCCGC GTGATCCGGG TGTCGAACCC CGACACCGCC GCGACGAAGC GCGTGTTCAC GGCGTCGGTG GCACATCCCC GCCGCGGCCG CTCGGAGCTG GCCTACGCGA TCGTGCCGGG CGGGAGCGCC GAGCAGCTCG CCGCGTACCA GCGCGGACCG GTCCAGGTGC TGCGCAACGA CGGCCGGATC CAGGCGGTGC GGCACTCCGG CCTCGGCCTG GTCGCCGCGA ACGTGTTCGC CGGGGGCACC CAGCAGGTCC GCAACGTGGC GATCGACGGG CCGGCGTCCG TGCTCGTGCG GGAGACGGAC GACGGCGGCA CGTCCGTCGC GCTGTCCGAC CCGACGATGG ACCGGCGCTC GGTGACGGTG ACGATCCGGG GGCGGCGGCT CGAGGCGGAG TCGGCGGACG ACGGCGTCGA GGTGCGTCGG GTGCCCGGCG GCACCGAGGT GCGGGCCGAC GTGCGCGAGG CCTACGGGGC GAGCTTCACG GCGACGCTCC GGCCGCGCTG A
|
Protein sequence | MQLSRRQVLA MVPAGALLAI AAPMRAYADT PADHARLLAN AVAIFAGTAE SNARPEAAAK LAAIQTTART RLAELDAAGP GELFAGVPLG TSDPNLNTSF LRLYEIALAT CTPGVASELV GSTEVRRRVI DGLVWLHENY YGDQAAGYYG NWFTWEIGIS ASVSKTLVLL DDDVAAYRPE LVGTYVASMD AYLRNGVGGD VNLDSRFHTG ANLADITTNR VLQGALTADD ARVSKAIADQ STVFATIDPY DLQHGNTDGY YADGSFIQHH SVAYTGSYGR TLLTRVVQTV KLLDGTAAAP GTELADVVHG WVRDGFAPVI VEGWMAEIVK GRAVSRTGTG YADVATVVEA VVDLADYASA ENALALRGYV RYLEAASPTP ADPTRFVSPV SIVRYADILA DDALPTQDLN PAERTVAFNA MDRTVHRRTG YTFALARSSD RISRYEYMNG ENLMPWFQGD GMHYLYLAGQ DQTQAFGVDF FTTVSPYRLP GTTVPVEERQ TIPELYGRFW YENPDHPLGF TSSSESQNTY VYFPRGTNAF SGGATLGTYG VAGMVLSDDV PYVDAQAGVL PDDFVVYANA RATKSWFLLD DEIVVLAADV HDPHRRDVVT TLDSRIAAPG DGVVVTGARR GGRAWSPDDG PERLEWLRWE NPAQGVVVGY ALLDAGPVAV TLEDVTRSRR VIRVSNPDTA ATKRVFTASV AHPRRGRSEL AYAIVPGGSA EQLAAYQRGP VQVLRNDGRI QAVRHSGLGL VAANVFAGGT QQVRNVAIDG PASVLVRETD DGGTSVALSD PTMDRRSVTV TIRGRRLEAE SADDGVEVRR VPGGTEVRAD VREAYGASFT ATLRPR
|
| |