| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6369 |
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| Symbol | |
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| ID | 4315273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | + |
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| Start bp | 984107 |
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| End bp | 987721 |
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| Gene Length | 3615 bp |
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| Protein Length | 1204 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638154213 |
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| Product | YadA domain-containing protein |
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| Protein accession | YP_778247 |
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| Protein GI | 115361110 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
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| COG ID | [COG5295] Autotransporter adhesin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.771283 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAGGA ACCAGATTTC GGCGCTCGTC GCCGCCATGT TCGCAAGCGC AGGCGTGCTG
GTCGCGGGGG CCGCACACGC GGACAACTTC GTCGATCGCG GCAACCCGGA CAACGCACTG
AACGGGCAGT GCATCGACGG TACGAACCCG TTGTGTGTCG CGACGAAGAG TGGGACGTTC
GTCGCGACGA GCAGCACGAA CTTCACGTCT GGTACGAATG CGAAGGCCGG CTCCAGCGGC
ATTGCGATCG GCGACCAGTC GAACGCAGGC AGCCAGGGCG GCTCCGGCAG TGGCGGCGGC
ATTGCGATCG GCGTCGGCGC GCAGGCACTG GCGAACTCGG CCACGGCGAT CGGCACGGTG
GCCGTCGCGC AGGGCAATAC GGCGCTCGCG GTGGGCCGTC AGTCCGCCGC GATCGGCGAT
TACTCGATGG CGCTCGGCAA CGTCGCCGAT GCGCACGGCA CGAGTTCGAT CGCACTCGGT
CACTCGGCGC TGGCGAGCGG CGATCGCTCG ATCGCGATCG GCGGCGCGAA TCCGACCACG
AGCGACGGCG TGTCGAACGG CGCATCCTAC GATGCCGCAA CGCAAACCCG TGCGGGCGGC
ACGCAATCCG TCGCGATCGG CGCCGGCGCG CAGACGAACG ACAACAACCA GGTCGCGATC
GGCTCGGGCA GCGTCGGTGC GAACAACGGC GGCACGCCGG TATTCGGCGG CACGGCCGCG
CCGGTCGGCG GCGCCGTCTC GTTCGGTTCG CTCGGCCACG AACGCCAGAT CAAGAATGTC
GCGGCGGGCG CGGCCGACAC GGACGCCGTG AACGTCGAGC AGCTGAAGAA CGTGAACAGC
ACGCTCAGCA CCGGCATCGC AAACGTCGAC GCCCGCGTGA CCTCCGTCGG CAATACGCTG
TCGACGTCGA TCGCGAACGT CGACCAGCGC GTGTCCAACG TCGGCAACAG CCTCAGCACG
AGCATCGTGA CGGCGACACA GAACGTCGTC AAATACACCG ACGATTCGCA CGCCGCGATC
GCGCTAGACG GCAGCAACGG CACGACGATC AACGGTGTCG CCGCCGGTGT CGCCGATACG
GACGCGGTCA ACGTCGGCCA GCTGAAGGGC AGCGTTGCAC CGTTGCAGAC CTCGCTGTCG
ACGGCCGCCG CGAACATCAC GAACCTGCAG AACAACGTGA CGGGCCTCAA CGCATCGCTG
AGCACGGCCG CATCGAACAT CGGCGGCCTG CAGGCAGCCG ATGCGCGCAA CGTGAAGTAC
GACGGCGCGA GCGGCTTCGA CTCGGTCACG TTCGCCGGCC CGAACGGCAC GACGCTGCAC
AATGTCGCGG ACGGCAAGGA TGCGCACGAT GCCGTGAACG CCGGCCAACT GGGTAGCGGC
CTCGCATCGC TCAGCACGAG CGTGACCAGC AGCGTGAGCA CGACGATCGG CAACCTGAGC
ACGTCGATCA CGAGCCAGAT CGGCAACGCG ACGAAGAACG CGGTGCAGTA CGACGACGAT
GCGCATGGCG GCGTCACGCT CGGCGGCCAG GGCGCGCCGG CACCGGTCGC CCTGCACAAC
GTCGCGGACG GCGTGAGCGC GAACGACGCG GTGAACGTCG GCCAGCTCGG CAAGGCGACC
GATACGCTGA ACCAGTCGAT CGCCAACGTC GGCAACAGCG TGACGAAGCT CGGCGACCAA
GTGACGACGA ACACCGGCAA CATCGCCGCG CTGCAGCAGG ATGCGCTCCA ATGGAACCCG
AGCCTCGGCA CTTACGATGC GAGCCACGGC GGCAACAGCC CGCAACGCAT CGGCAACCTC
GCGGCCGGCC AGAATGGCAC CGACGCGGTC AACGTCGACC AGCTGAACGC GGCGATTCAC
GACGGCACGA GCCAGCTCGA CGCGCTCGCC GTGAAGTACG ACGATGCGAG CAAGCATCAG
GTTTCGCTCG GCGCGGGCAA CGGCGGGATT CCCGTGCGCG TGACCAACGT CGCCGAAGGC
AACGTGTCGG CCGGCAGCAC GGACGCCGTG AACGGCGCGC AGCTGCGCCG CGCGATCGAC
GGCACGGCAG CCGCGCTCGG CGGCGGGGCG ACGGCGAATA CGGATGGCTC GATCACGGCG
CCCGCGTACA AGATCGGCGG CGATTCGTTC AACAATGTCG GCGACGCGCT GACGAACCTC
GATGGCCGTG TCGGCAGCAA CACGACGACG CTCGCGAATC ACGAGACGCG CATCGGCAAC
GCCGAAACGA ACATCGCCGT CAATACGACC GCGATCGCCG GGCTGCAGAA GGACGCGCTG
CAGTTCGACC CGACGCTCGG CGCATACAAC GCCGCCCGTG GCGGCGCGCC GACGAAGCTG
ACCAGCGTCG CCGACGGCAA TGTTGCGGCC GGCAGCACGG ACGCGGTGAA CGGCGGGCAG
TTGTACGGCG TGAAGTCCGA TCTCGAGCAG CAGATCACGC AGGTGTCGAA CCAGACGGGC
GAGGCCGTGA AGAACGTCGT CAAGTACGAC GTCGATGGCA ACGGCAACCG GCTGAACTCG
GTATCGCTGA TCGGCGGCAA CCCGAACGCG GCGGTCGTGT TGAAGAACGT CGCGGCCGGC
ACCGACGATA CGGACGCGGT GAACGTGAAG CAGCTGAAGT CGGTGCAGTC GAACCTCGAC
CAGCTCGGCG CGCTCGCGGT GCAGTACGAC GACAGCTCGA AGGGCTCGAT CACGCTCGGC
GGGGCGGGTG GCACGCGCAT CACCAACGTG AAGGCCGGCA CGCTCAGCGC GACCAGCACG
GACGCGGTGA ACGGCTCGCA GCTCTACGCG ACGAACCAGC AGGTGTCGAA GAACACGACC
GATATCGCGA ACCTGCAGGA CAACGTGACC AACATCGCGA ACGGCAAGGC CGGGCTCGTG
CAGCAGCAGG ACCCGAAAGG CGCGATCACG GTCGGCAAGG ACTCGGGCGG CACCAGCGTG
AACTTCTCCG GCACGGCGGG CGACCGCGTG CTGACCGGTG TCGCGGCCGG CGTGAACGCC
AACGACGCGG TCAACATGGC CCAGTTCAAC GACGCGCTGA AGACGGCGGC GGTCAACGAC
CAGATCCGTG CGGCCGCAAC CGATGCGAAC ACGACGTGGA TCGCGCGTGC CGATGCCGGT
TCGATCGGCT CGACGGCGAC GGCAACCGGC AAGAACGCGG TGGCGGTCGG CCAGGGCTCA
GTGGCGGATC GCGACAATTC GTTCTCGGTC GGCGCGAAGG GCAACGAACG GCAAGTCACG
AACGTCGCGG CCGGCACGGC GCCGACCGAC GCGGTGAACG TGCAGCAGCT GAACGACAAC
CTCAATGCCG CGTCGACGCA GGCGAAGGGC TACACCGACC AGCGCATCGG GCAGGTGTAC
AACTCGTTCA ACGACCTGAA GAAGGACATG TACGGCGGCG TGGCGTCGGC GATGGCGGTG
GCCGGTTTGC CGCAGCCGAC GGGGGCCGGG CGCTCGATGG TGTCGGCGGC GACGTCGAAC
TATCACGGGC AGCAAGGCTT CGCGGCAGGC TATTCGTACG TGACGGAGAA CAACCGCTGG
GTCGTCAAGG CGTCGGTGAC GGGCAATGCG CGCTCCGACT TCGGCGCGGT GGTGGGCGCA
GGCTATCAGT TCTGA
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| Protein sequence | MQRNQISALV AAMFASAGVL VAGAAHADNF VDRGNPDNAL NGQCIDGTNP LCVATKSGTF
VATSSTNFTS GTNAKAGSSG IAIGDQSNAG SQGGSGSGGG IAIGVGAQAL ANSATAIGTV
AVAQGNTALA VGRQSAAIGD YSMALGNVAD AHGTSSIALG HSALASGDRS IAIGGANPTT
SDGVSNGASY DAATQTRAGG TQSVAIGAGA QTNDNNQVAI GSGSVGANNG GTPVFGGTAA
PVGGAVSFGS LGHERQIKNV AAGAADTDAV NVEQLKNVNS TLSTGIANVD ARVTSVGNTL
STSIANVDQR VSNVGNSLST SIVTATQNVV KYTDDSHAAI ALDGSNGTTI NGVAAGVADT
DAVNVGQLKG SVAPLQTSLS TAAANITNLQ NNVTGLNASL STAASNIGGL QAADARNVKY
DGASGFDSVT FAGPNGTTLH NVADGKDAHD AVNAGQLGSG LASLSTSVTS SVSTTIGNLS
TSITSQIGNA TKNAVQYDDD AHGGVTLGGQ GAPAPVALHN VADGVSANDA VNVGQLGKAT
DTLNQSIANV GNSVTKLGDQ VTTNTGNIAA LQQDALQWNP SLGTYDASHG GNSPQRIGNL
AAGQNGTDAV NVDQLNAAIH DGTSQLDALA VKYDDASKHQ VSLGAGNGGI PVRVTNVAEG
NVSAGSTDAV NGAQLRRAID GTAAALGGGA TANTDGSITA PAYKIGGDSF NNVGDALTNL
DGRVGSNTTT LANHETRIGN AETNIAVNTT AIAGLQKDAL QFDPTLGAYN AARGGAPTKL
TSVADGNVAA GSTDAVNGGQ LYGVKSDLEQ QITQVSNQTG EAVKNVVKYD VDGNGNRLNS
VSLIGGNPNA AVVLKNVAAG TDDTDAVNVK QLKSVQSNLD QLGALAVQYD DSSKGSITLG
GAGGTRITNV KAGTLSATST DAVNGSQLYA TNQQVSKNTT DIANLQDNVT NIANGKAGLV
QQQDPKGAIT VGKDSGGTSV NFSGTAGDRV LTGVAAGVNA NDAVNMAQFN DALKTAAVND
QIRAAATDAN TTWIARADAG SIGSTATATG KNAVAVGQGS VADRDNSFSV GAKGNERQVT
NVAAGTAPTD AVNVQQLNDN LNAASTQAKG YTDQRIGQVY NSFNDLKKDM YGGVASAMAV
AGLPQPTGAG RSMVSAATSN YHGQQGFAAG YSYVTENNRW VVKASVTGNA RSDFGAVVGA
GYQF
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