Gene Bamb_5968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5968 
Symbol 
ID4314872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp505093 
End bp505785 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content67% 
IMG OID638153807 
ProductTetR family transcriptional regulator 
Protein accessionYP_777846 
Protein GI115360709 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.609129 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACATG ATGAAGCGGC CGCCGCAGCC GGCGGCCACG ACGAAACGGG CACGCCTTTG 
CGGCGACGCA AGGCGCACAT CCGCGAGTCC AACGAAGCGC ATTTGCTGGC CTGCGCGGAA
GCCGTGTTCG CGGAGCGCGG GCTCAACGGT GCGAGCACCG CGATGATCGC CGAACGGGCG
GGCCTGCCGA AGGCGAACCT GCATTACTAC TTCCCGACGA AGCTGGCGTT GTACCGCCGT
GTGCTCGACG ACCTGTTCGA AGACTGGCAT CACGCGGCCG GCTCGTTCGA GGCCGGCGAC
GATCCGGTCG AGGCGATCGG CAGCTACGTG CGCGCGAAGA TGGATCTGTC GCGACGGCGC
CCGCTCGGCT CGAAGGTGTG GGCCAACGAG ATCATCCACG GCGCCGAGCA CATGCAGGAC
ATCCTGTCGG AACGTGTGAA GCCGTGGTTC GACACGCGCG TGCACGTGAT CGAAGGCTGG
ATCGCGCGCG GGCTGCTCGC GCCGATCGAC GCGCACGCAT TGATGTACCT GATCTGGGCG
ACCACGCAGC ACTATGCGGA TTTCGATGCG CAGATCCGCG CGCTGAGCGG CAAGCGTGCG
TTCACGCAGA AGGCCTTCGC CGCGAAGACC GAGCACGTCG TGCAGCTCGT GATCCGCGCG
TGCGGTGCGG TGTCGCCGGG AGCGAGCGCA TAG
 
Protein sequence
MRHDEAAAAA GGHDETGTPL RRRKAHIRES NEAHLLACAE AVFAERGLNG ASTAMIAERA 
GLPKANLHYY FPTKLALYRR VLDDLFEDWH HAAGSFEAGD DPVEAIGSYV RAKMDLSRRR
PLGSKVWANE IIHGAEHMQD ILSERVKPWF DTRVHVIEGW IARGLLAPID AHALMYLIWA
TTQHYADFDA QIRALSGKRA FTQKAFAAKT EHVVQLVIRA CGAVSPGASA