Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5912 |
Symbol | |
ID | 4314817 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | + |
Start bp | 394800 |
End bp | 395627 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 638153752 |
Product | xylose isomerase domain-containing protein |
Protein accession | YP_777791 |
Protein GI | 115360654 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.2156 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00155667 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGACTTCT TCCAGCCGGT TCCCCTCGCG CTCGCCCACC TGACGGCACT CGATCTGCCG CCGCCCGAGC TCGTCACCGC GGCGGCGGCG GCCGGTTACG CGGCGGTCGG CCTGCGGCTG TACCCGGCCT TCGCCGGTTC GCGCTTCTAC TCGCTGCCGG CCGGCTCGGC TGCGATCGCC GAGGTACGGC ATCGCCTCGA CGCCACCGGC CTCACGGTCA ACGACATCGA GTTCATCGGC ATCGGCGCCG ACTTCGACGC CGCCGCGCTC GACCCGCTGC TGGAGACGGC GGCCGAGCTC GGCGCGCGCT GCCTCAGCGT GTGCGGGGAC GATCCCGAGC GCGCCCGGCT GAGCGCGAAC TTCGCCCGCC TTTGCGAGCG GGCGGCCCCG TTCGGCCTGC GCGTCGAACT CGAATTCATG GCCTGGCGCG CGGTCGCCCG CTTCGGCGAT GCCGCCGAGG TGGTGACGGC GGCGCGCCAG CCCAATGGCG GCATGCTGAT CGACGCGCTG CATGTGTGGC GCACCGGCGG CTCCGAGCGC GACCTCGGCA GCGTGCCGGC CGCGATGATC CGCACCGCGC AGCTCTGCGA CGCGCCGGCC GCGCCGCCGC CCACGTCCGA GGCGCTGCTC GAGGAGGCCC GCGCCGGTCG GCTCGCGCCG GGCCGGGGCG GGCTGCCCGT GGCCGCCCTG CTGGCCGCGC TGCCCGACGA CACCGCGCTG TCGCTCGAAG TGCCCGGCGG CGGGCAGGTC CCGCTCGAAC GCCATGTGCG CGAGGTGTTC GAGGCGACGC GGAACCTGAT CGCCTCGCTC GCGACGGTGC GCTCATGA
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Protein sequence | MDFFQPVPLA LAHLTALDLP PPELVTAAAA AGYAAVGLRL YPAFAGSRFY SLPAGSAAIA EVRHRLDATG LTVNDIEFIG IGADFDAAAL DPLLETAAEL GARCLSVCGD DPERARLSAN FARLCERAAP FGLRVELEFM AWRAVARFGD AAEVVTAARQ PNGGMLIDAL HVWRTGGSER DLGSVPAAMI RTAQLCDAPA APPPTSEALL EEARAGRLAP GRGGLPVAAL LAALPDDTAL SLEVPGGGQV PLERHVREVF EATRNLIASL ATVRS
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