| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5454 |
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| Symbol | |
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| ID | 4314343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 2516322 |
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| End bp | 2517854 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638153296 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_777335 |
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| Protein GI | 115360197 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.488047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCAT ACCCGCTGCC TGCTACGCTG CGCCGCCATA CCGTGTCGGC CGTGGCCCGC
ATTCTGTCGC CCCGCGGCGT ACTCGTCGCG GGCATCGTGC TGTTGCTGCT CAGCTGGGGA
TTTTCGACGT CGCTTTTAAT CGAGGCACGC AACGACGCGT ACGGCCATGC GGTCGAAAAT
GCGCGCAATC TGATGCTGCT GATCGAGCGC GATATTTCAC GCAATATCGA ACTTTATGAT
CTGTCACTAC AAAACGTGGT CGACGGTCTC TCTGATCCGG AACTGATGGC ATTGCCGCCG
CGCCAGCGTC ACCGGCTGCT GTTCGACCGC GCCGCGACCG GCGCGTATCT CGGCGCCATT
TTCGTGATGG ACCCGCACGG CAATATCGTG ATCGATTCGG CCACATCGCC GCCGCGGCCA
GGCAATTTCG CCGATCGCGA CTATTTCACC GTGCATCGTG ACCGGCTTGC GCCGGGCCTC
TACATCAGCC GGCCCTATGC GTCCCGGCTG CGCGGCGGCG CACTGACGAT CGCGCTCAGC
CGCCGGATCG TCAAGGCCGA CGGCACGTTC GGCGGGATCG TCGTCGGCAC GCTGAACATC
GACTACTTCC GCGCGCTGCT TGACGGGATC GCCGTCGGCA GGCACGGCAG CGCCGCGGTG
ATCGAAGACA ACGGCGCGCT CGTGTCCCGC CTGCCGTACG ACGCGCGCGT GGTCGGCCTC
GATCTGCACG ACTCGCCGCT CTTCATCGAG TCGCAGCGCC GCAGCGAAGG CGCGCTCACG
GGCGTCGGCG CGATCGACGG CGTGCGCCGT ATCTATGTTT ACAAGCATCT CGCGAATCTG
CCGCTGCTCG TCGACGTCGC GCCCGCCGAG ATCGACATCT ACGCATCGTG GCGCCATCGC
GCGATCTGGA CCGCCGTGCT GATGGGCCTG TTCACCGCGT TCATCGCGTG GGGCTCGCTC
GCGCTGTCGC GCGAACTCAG GCGCCGGCAG ATCGCCGAGT CGAAGCTGTA CCGGCTCGCG
CACACCGATT CGCTGACCGG CCTCGACAAC CGCGGCACCT TCGACGCGGT GCTCGCGAAG
GAAGCGCAGC GCGCGTCGCG CAGCGGCCGC CCGCTGTCGG TGCTGTTCGT CGACGTCGAT
CATTTCAAGG CGTTCAACGA CTACTACGGC CACCTCGCCG GCGACGACGT GCTGCGCCGT
GTCGCGCAAT CCGCGTCGCG CTGCCTGCGT CGCGACAGCG ACCACGTCGC GCGCTACGGC
GGCGAGGAAT TCGTCGTCAC GCTGCCCGAC ACCGATGCGC GGGGCGCGGC GACCGTCGCC
GAGACGATCC GCCGCGCGAT CGCCGGGCTC GACATCGCGC ACGGCCGCAG CCCGTACGGG
CACGTGACGA CGAGCATCGG CACCGCGACC GCCACCGGCG GGCGCGTGAA CGCCGCGGCG
CTGCTGCGGC AGGCCGACGA GGCGCTGTAC CGCGCGAAGT CCGGCGGCCG CAATCGCGTG
TCCGATGCCG AGGCGAGCAC GGCCGACGCG TGA
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| Protein sequence | MNSYPLPATL RRHTVSAVAR ILSPRGVLVA GIVLLLLSWG FSTSLLIEAR NDAYGHAVEN
ARNLMLLIER DISRNIELYD LSLQNVVDGL SDPELMALPP RQRHRLLFDR AATGAYLGAI
FVMDPHGNIV IDSATSPPRP GNFADRDYFT VHRDRLAPGL YISRPYASRL RGGALTIALS
RRIVKADGTF GGIVVGTLNI DYFRALLDGI AVGRHGSAAV IEDNGALVSR LPYDARVVGL
DLHDSPLFIE SQRRSEGALT GVGAIDGVRR IYVYKHLANL PLLVDVAPAE IDIYASWRHR
AIWTAVLMGL FTAFIAWGSL ALSRELRRRQ IAESKLYRLA HTDSLTGLDN RGTFDAVLAK
EAQRASRSGR PLSVLFVDVD HFKAFNDYYG HLAGDDVLRR VAQSASRCLR RDSDHVARYG
GEEFVVTLPD TDARGAATVA ETIRRAIAGL DIAHGRSPYG HVTTSIGTAT ATGGRVNAAA
LLRQADEALY RAKSGGRNRV SDAEASTADA
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