| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5366 |
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| Symbol | |
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| ID | 4314255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 2408710 |
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| End bp | 2412564 |
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| Gene Length | 3855 bp |
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| Protein Length | 1284 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638153207 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_777247 |
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| Protein GI | 115360109 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.317319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.534977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATGT TTACTCAGGC TCACACGCTG TCCATCACGG GCGCGGCATT GCCGACCTAT
GGGATGGACG CGCTACCAGT ATTCGTGCCA GTGCGCTTGC AAGGCACCGA AACCATCGGC
CGTCTTGATG AATGCCGCTA CCTCGTCACG CTGCGCACCG ACGGCGCTTA TGCGGTTTCG
CCGAGTCGCA CGGCCGATCT CGATCTGGAC AAGATGGTCG GTACTGAAGT GACGGTGTCG
ATCCAGATCG AAGGCAAAGG GCATTTCATT CCCGGGCTGG CCGGGAGCGC CGGGCTCCGC
AACATCGGCG CGGGAACGCG CGAAATCACC GGGCTTGTCG AAGCAGCACG GCTCGCGGGT
AGGGATCGAG ATTCGATCCT CTACGAACTC GAACTACGGC CGTGGCTCTA TCGCGCAACC
CTGACGCAGG ATTGTCGCCT GTTTCAGGAT ATGACAGTCG TTGAAGTCAC CGACGCGGTG
CTCGCGAAAT ATCCCTACCC CGTCGATAAA CGCCTGGGTG CATTCCGGGG CACCTATCCG
AAACGTGACG TGCAGCGACA GGCGTTTGAA TCGGACTGGG CGTTCCTGCA ACGCCTCTGG
GAGGAATGGG GGATCTGGTG GTGGTTCGAG CACGATGATG GCCATCACCG TCTGGTCTTG
TGCGACTCGA TGGGCGGCCA TCATCCGCAC GGCGCGGCCT ATGAGATGCT GCGTTATCTG
CCGCCCGATG GTCAGCGTAT TGATGAGGAA CACATTCGCG CGCTGTCCGT GACCAGCCGA
CTGACGCCGG GGCGCGTAGT CGTGACAGAC TACGACTACA CCCGCCCGCG CGCCAATCTG
GCCGCCACGG CGGAAGACCC TCGCCCGACC GCAAGCGCAG ACGGCGAGAT TTACGGTTGG
GGCGATTACA GTCAGCCGCT CGCGGGCGCG CAAGGGCTGA CGGGCCAGCC GAACGATACG
GAACGGGAGG CGCAGCACTT CGCGCGCGTG CAGCTTGAAG CGCAGCGCTG CGCGGGGCGG
CGTGCGAACG GCCAAGGCAA TCTGCGCGGC CTCACGGTCG GCTACACCTT TACGTTGACC
GGCTATCCGC AGCAGGCAGC GAACCGTGAA TACCTCGTTG TAGCGTGCAC GCTCGACATT
GAGGAAGTCG CGGGACGGAC CAGCGGCACC CGGACCTATC GCGTTGACGC GCAATTCGAA
CTGTTGCCGA CAAACGAACC GTTCCGGCTG GAGCGTAGCG TCCGCAAGCC CGTCCTGAGC
GGGCCGGAGA AAGCCATCGT CGTCGGCCCC GCCGAACAGG AAGTCTGGAC GGACCAATAC
GGCCGGGTCA AGGTTCAGTT TCAATGGGAT CGGCAGGGCC GGCACGACGA GCATTCGGGT
ATCTGGCTGC GCGTGCTGTC GCCGTGGCAA GGTGTGGACA TGGGCGCGAC GTTCCTGCCG
CGTATCGGTC ATGAGGTCGC TGTGTCGCAC TACTACGGTG ATCCGGATTT ACCGGTGATT
ATCGGCAGTG CCGTCAACGC GTTCCGCCAG CCTGCGTTGG ACCTGCCGCA CAATCATGCG
CTGTCGGTAC TGCGCGGCAA GGAATTCCAC GGCACCGCAT CCGGCCACGT AGCAATCGAC
GATACGCGGG AGCAAATCCA GACGCAGATA GCCAGCGACG CGGGCACGTC GCAACTGAGT
CTCGGCAATA TCCGGCGTAT TACCCGAAAG AAGGGCCGTG CCGACGCGCG CGGCAAAGGC
TTCGATCTTC GTACCGACGA CTGGGGCGTT GTCCGGGCTT TGAAAGGTTT GCTCGTGTCG
ACGGACGGTC AACCGGGCGG CCCCGGTCAC GCGAAGGACG TCAAGGAGGC AGTGGGTCGG
CTGACGCAGG CGCGCAAGCT ACAGGAAAGC CTCACGGATT TGGCGCAACA GCACGACGCG
CAACAGCATG GCGCAGACCA GAGCGTCGTG ACCTCTGCGC TCAAGGCGCG CAACGAGGCG
ATCGGGGGCA ACACGCCCGC CGGCCCGGAC GATTTCCCGG AACTGACGGA GGCCGACATC
GTGTTTGCGG GGCCGGCGGG TATCAGTCTG GCGGCCGGGC GTAGCGCCCA TATCGCGAGC
AACGAGGACG TGGCGGTCAC GAGCGGCCGG CATGTCGGAA TTGCGGTAGG GCGCTCGCTG
TTCGCGAGCG TGTCGAATGC GTTCTCGCTG TTTGTGCACA AGGCAGGCAT GGCACTCGTT
GCCGCCGCGG GGAAAGTGCG CGTCGAGGCG CAGACCGATG GTGTCGACGT GACCGCTAAA
AAGGCAATCC AGATCACGAG CACGACCGAC AGTATCCATC TGCACGCCGC GAAGGAAATC
GTGCTACATG CCGGTAGTAC GGAAGTGCGC ATTAGCGATC AGGGCTATGT GGTGCGAACA
GCGGGTGAGC ACACGATCTT TGCAGGCAGT CATCAGACAG ACGAAGCGCG GGTGCGACTG
ATGCGGCTGC CGGTCACGCC CCACAATCCG GGGCAGTATG CCGTGCACTT TGTGCTGTTG
GAGCACGACA GCGGGTTTGC CCTGCCGAAC CAGCCGTACC GGGTCACGCT CGACAACGGC
CGCGTGATAG AGGGGGTGAG CAACGAACTG GGCGAAACGG ACGTGGTGAC GAGCCACGAC
ATCGCGTTCG GCACGGTGGA ACTGCTGGCG GCGAGCGACC CGGACAAGGT GATTGCGGTG
AACCGGGCCG CCATCGTGCG CGACAACACG ACGCCCTACA CCGCCCAAGC GCCGAACGCC
GACAAACGCA CCACAACGAT CAAGGGCAAG AAGGTCAGCA CCCCGGAACA GGGGGCTACG
TCCGAGAGTC AGCCGGCCGC GTTCGCGAGC TGCGACCCGC TCAACTTCGG ATTGCGCTTC
CATCACTTCA TCGACGGGGC TAAACAGGGC GATGCGCGTG CGGACATGCC GATACGCCGG
GATGTTGAGT ATCCGGTGAC GAAGACCTAT ACAGCCGCGA TCAAGAAGGC GCTCACCGGG
ATCGAGTGGG GCAAGGTCAA TGCATTGAGC CGCGAGATAT CGGACGAGGC AAAGGAAAGT
ATCGCGCTTG CGGTTGGCAA TGTATTGAAT ACCGCTCTTG CGGCGGGGCC GTTTGGATTG
CCAAGAGGTT CTTCAAGTGA CCCGATGAAG TCAAATGGCG TGACTCCCAA GATCGATATT
GTTAACGCAA CGGAAGGGGC TGCCAAATAC AACATGCGTC CGGATGTCAG TGCGTCATTT
ATCGCTAGGT ACTGGGCAAT AGTTATCCAA GAGAAAGAAA TTGCGAAGAT CGATGCATCA
TCGAACAATG CAACTGCCTT GGATGGAACG CTGAAGGCGT TCGCGGACAT GCTTTATCAC
GAAGCACGAC ACTGCCAGCA GGCGTTCTGG ATGGTGGCGC TATTTAGGCA ACATCCAGCC
GATTACGCAA TGTTTTCCCA TGCAACAAAA GTTTACAAGG ACAGCACGCG CAAGGACGTC
TTCAGCGCAG CCCAAAAAGC CATTATCCCA GATGACGCGC GTGTGATGGC GGGGCTGCAT
CGCATGTTGA TATTTCACTA TTACTGGATG ATTTCGTACA TACAAAATCA ACCGGGCGGA
GCCTATGTGA AGCCCGACGT GCCAATTGCA CAGGCCGAGG TGTGCAAGCT GTTGAGGGTG
TCGCCAGAAA CGGCGGCCAA GATGGCGAGA TTCGAAGTTG GATACCGGAG CCAGTTACAT
GAAGAAGATG CTTATGCGTG TGCGGAGGCG GTGCAAGCCT ATTGGGACCG CCCTGATCGT
GCTTTCGTGC GTAACCCCGG TACATGCACA GGAGGATACG ATGCTTCACA TAACGCCATT
GGGGGAGGGG TTTGA
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| Protein sequence | MAMFTQAHTL SITGAALPTY GMDALPVFVP VRLQGTETIG RLDECRYLVT LRTDGAYAVS
PSRTADLDLD KMVGTEVTVS IQIEGKGHFI PGLAGSAGLR NIGAGTREIT GLVEAARLAG
RDRDSILYEL ELRPWLYRAT LTQDCRLFQD MTVVEVTDAV LAKYPYPVDK RLGAFRGTYP
KRDVQRQAFE SDWAFLQRLW EEWGIWWWFE HDDGHHRLVL CDSMGGHHPH GAAYEMLRYL
PPDGQRIDEE HIRALSVTSR LTPGRVVVTD YDYTRPRANL AATAEDPRPT ASADGEIYGW
GDYSQPLAGA QGLTGQPNDT EREAQHFARV QLEAQRCAGR RANGQGNLRG LTVGYTFTLT
GYPQQAANRE YLVVACTLDI EEVAGRTSGT RTYRVDAQFE LLPTNEPFRL ERSVRKPVLS
GPEKAIVVGP AEQEVWTDQY GRVKVQFQWD RQGRHDEHSG IWLRVLSPWQ GVDMGATFLP
RIGHEVAVSH YYGDPDLPVI IGSAVNAFRQ PALDLPHNHA LSVLRGKEFH GTASGHVAID
DTREQIQTQI ASDAGTSQLS LGNIRRITRK KGRADARGKG FDLRTDDWGV VRALKGLLVS
TDGQPGGPGH AKDVKEAVGR LTQARKLQES LTDLAQQHDA QQHGADQSVV TSALKARNEA
IGGNTPAGPD DFPELTEADI VFAGPAGISL AAGRSAHIAS NEDVAVTSGR HVGIAVGRSL
FASVSNAFSL FVHKAGMALV AAAGKVRVEA QTDGVDVTAK KAIQITSTTD SIHLHAAKEI
VLHAGSTEVR ISDQGYVVRT AGEHTIFAGS HQTDEARVRL MRLPVTPHNP GQYAVHFVLL
EHDSGFALPN QPYRVTLDNG RVIEGVSNEL GETDVVTSHD IAFGTVELLA ASDPDKVIAV
NRAAIVRDNT TPYTAQAPNA DKRTTTIKGK KVSTPEQGAT SESQPAAFAS CDPLNFGLRF
HHFIDGAKQG DARADMPIRR DVEYPVTKTY TAAIKKALTG IEWGKVNALS REISDEAKES
IALAVGNVLN TALAAGPFGL PRGSSSDPMK SNGVTPKIDI VNATEGAAKY NMRPDVSASF
IARYWAIVIQ EKEIAKIDAS SNNATALDGT LKAFADMLYH EARHCQQAFW MVALFRQHPA
DYAMFSHATK VYKDSTRKDV FSAAQKAIIP DDARVMAGLH RMLIFHYYWM ISYIQNQPGG
AYVKPDVPIA QAEVCKLLRV SPETAAKMAR FEVGYRSQLH EEDAYACAEA VQAYWDRPDR
AFVRNPGTCT GGYDASHNAI GGGV
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