| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5209 |
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| Symbol | |
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| ID | 4314099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 2244169 |
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| End bp | 2246937 |
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| Gene Length | 2769 bp |
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| Protein Length | 922 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638153051 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_777091 |
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| Protein GI | 115359953 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATAG CAAAAACGCT CCGTAATTTT GCGTCTGGTC TGATTGACGG AAACCCGCGG
CCGGTCGATC TCCATTTCGG GCGCGCGCAA CGCGCGGTCG GCCATCTGTT GGCGCTCCAT
CACGCCGATA TCCACGAAGG GCTGATGTCC GGCATCGACG GGCAGCTGAC CTGCGTATCC
ACCCACGACC ATCTGTCGCC TGCGCTGTTT CTCGGGCTGC CCGTGTCGGT TCGGGTGACG
GCCGATCGGG GCGGCGTACG CGCGATCAAT GCGATCGTGC GCGAAGTGCG GACCGGTCAA
TCCGACGGCG AGCTGACCGT CTATCAACTG CAGGTGTGTG ACGCGCTGTC GTTGATGGAG
GGCCGCACGA ACGCCCGCGT GTTCCGCTCG CGCAGCGTGC CGGAAATCCT CACGACGCTG
ATGAACGAAT GGAAACAGCG CAGCTACGCA CTCGCGCGCG CGTTCGATTT CGACTTGTCC
GGGCTGCAGG CCGATCGCTA TCCGGTGCGC GAGCTCACGC GCCAGGTCAA CGAATCGGAC
GCGCGCTTCA TCCGGCGTCT GCTGCGCCGG GAAGGCATCA CGGTCTTCGC GCAGGCCGAG
ACGGTCGGCC GCGTGCACGG CATGGCCGAC GAGCAGCCGG TTCACACGCT CGTATTTTGC
GACGATCCGC ATTGTTTGAA GGAGGCACCG GCCGGTGCGC TGCGCCTTCA CCCTCGCGAT
GCGGGCGCTG CGCAGCGCGA CACGGTGACG CTCTTTGCGC ACCGCCAGCG CCTGTCGTCC
GGCAAGGTCC GCCGTCCGTC GTGGGACTAC AAGACGGCTC GCATCGACGA TTCAACGGCC
GTCGCCAGCC TCCATCAGGG TGAATCGGGA AACGATCTGG CCCACCTGCT GACCGACGTC
GCGATCGACA TCCCGCACGT CGGCGATTCG TGGAACGACC ACGACCGCAT CACGCGCGAC
CGGATACTGG CTCACCAGTT CGAAGCCGAG CGATACGACG GGATCAGCAA CGTGCGCGAT
TTGCCGGTCG GCCACTGGTT CACGCTGACG GGCGACCCGG AACTGGATAT GAAGCCCGTC
GAGCATCGTC GGTTCGTCGT CACGTCGGTT CGACACGATA TCCGCAACAA CCTGCCAACG
CAGCTCGCGA GCCGGGCGCA GGGACTCTTC GCGGCGAGCC GTAACCTGAC GGAAACCGTT
CCGGCGATAC CTGCCGATCC AGCGGAGCAA ACCGACACAC GCTACGAGAA CCGCTTCACG
TGCGTGCGGC GCGGCGTGCC GCTCAAACCC GCCTACGATC CGAAGATCGA TGTGCCGCCG
GTTCACCTGC TGACCGGCAC GATCGTCGGC ATGCAGGGCG AGGAAGTGTT TTGCGACAGC
GCCGGCCGCG TACGCGTGCG GATTCACGGT TACGACCCGG CCGATCATGC GCACGCGCAA
GGCGCCGGAA CGAACGGCCG GGCTGGTGAC AGCGCACCGA TCCGCGTCGG AGCAAATCTG
GCGGGCGGCA ACTTCGGGAC GCTCTTCCTG CCCCGCGTCG GCATGGAAGT CCTGCTGGGA
TGTCTTGCAG GCGACCCAGA CCGGTTGGTC ATCATCGGCG TGCTGAGCAA TGGCGCGAAC
CCGCCCGCGA CCTTCAGCCA TACCGGCGCG CTTCCCGGCA ACCGGTTCCT CTCCGGTATC
AAGACCAAGG AAATCAACGG CAGGCGTTAT AACCAGCTTC GTCTGGACGA TACGCCGTCG
CAAATCTCGG CGCAGTTGGC GAGCGAACAT GCGCATACCG AATTGAATCT CGGGTATCTG
ACGCAGCCGC GAGAAAACGG ACATGGTGAG GCGCGCGGCG AAGGCGCGGA GCTGCGCACC
GATGCCGCCG CCGCATTGCG CGCCGCGCGC GGCATCCTGC TGTCGACCTA TGCGCGCACA
CGGGCCACCG GTGGTCAGCT CGATCGCGAT GAACTGATTC GCCTGCTCGA TCAATGCACC
GAACTCTTCA AATCGCTCGG CGATTACGCC GGCCAGCACG GCGGACAGTC CGCCGACACC
AGCGGGCAGG ACAACGTCGC CAGTGCATTC CGCAACTGGA CGCCTGGCGG TGCACCAGCC
GGCGCGGCCG ACGATGCGTG CGCGCTGCTC GCATTCGGCG CGCAGTCCGG GGCCCTCCAC
GTCACGCCCA AAACGCACGT CATCCATGCG GGCGAGAACA TCGATCAAGT CGCGCAACAA
CATGTGCAAG TCACGAGCGG CGAACGCATC AATCTGCATG CCGGTCGCGG CGTCGCGATG
TTTGCGCACG GCGACGGCGT GTCGGCGATC GCGAATCAGG GGAAGGTCAC GATCCAGTCG
CAGAACGACG ATACGCGCGT CGACTCGGCG AAGAACATTC AATTGACCGC AGCGGGCGGG
AAGCTCGTCG GCACCGCGAG CGATGAAGTC GTGCTCGTTA CGTCCGGTGG TGCGTATCTC
CGGCTGCGCG GCGGCGATAT CGAGCTGGGA TGCCCCGGCA CGTTCACGGT GAAGTCGGCT
GGTCATGCTT GGGATGGTCC GGCGAGCATG AACGCGGACA TGCCGACATT CGCTCAGGAC
ACGCTTGGCC GGGTGCCAAA GCTCGTCCGC GCGACGGACG GCCACGCGGC GGCGGGATTC
GAAGGCGAAA TTCAAAAGCC ATCCGGGCCG GTGTCCAATG TGTCGAGCGA CGTGGCCGGC
CAACTGCCCG CCGTCGATGC CGACCAGTTC GAAAGACTGG CGGTGCGATT CATCAAGAAA
AACGTATAG
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| Protein sequence | MSIAKTLRNF ASGLIDGNPR PVDLHFGRAQ RAVGHLLALH HADIHEGLMS GIDGQLTCVS
THDHLSPALF LGLPVSVRVT ADRGGVRAIN AIVREVRTGQ SDGELTVYQL QVCDALSLME
GRTNARVFRS RSVPEILTTL MNEWKQRSYA LARAFDFDLS GLQADRYPVR ELTRQVNESD
ARFIRRLLRR EGITVFAQAE TVGRVHGMAD EQPVHTLVFC DDPHCLKEAP AGALRLHPRD
AGAAQRDTVT LFAHRQRLSS GKVRRPSWDY KTARIDDSTA VASLHQGESG NDLAHLLTDV
AIDIPHVGDS WNDHDRITRD RILAHQFEAE RYDGISNVRD LPVGHWFTLT GDPELDMKPV
EHRRFVVTSV RHDIRNNLPT QLASRAQGLF AASRNLTETV PAIPADPAEQ TDTRYENRFT
CVRRGVPLKP AYDPKIDVPP VHLLTGTIVG MQGEEVFCDS AGRVRVRIHG YDPADHAHAQ
GAGTNGRAGD SAPIRVGANL AGGNFGTLFL PRVGMEVLLG CLAGDPDRLV IIGVLSNGAN
PPATFSHTGA LPGNRFLSGI KTKEINGRRY NQLRLDDTPS QISAQLASEH AHTELNLGYL
TQPRENGHGE ARGEGAELRT DAAAALRAAR GILLSTYART RATGGQLDRD ELIRLLDQCT
ELFKSLGDYA GQHGGQSADT SGQDNVASAF RNWTPGGAPA GAADDACALL AFGAQSGALH
VTPKTHVIHA GENIDQVAQQ HVQVTSGERI NLHAGRGVAM FAHGDGVSAI ANQGKVTIQS
QNDDTRVDSA KNIQLTAAGG KLVGTASDEV VLVTSGGAYL RLRGGDIELG CPGTFTVKSA
GHAWDGPASM NADMPTFAQD TLGRVPKLVR ATDGHAAAGF EGEIQKPSGP VSNVSSDVAG
QLPAVDADQF ERLAVRFIKK NV
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