Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5105 |
Symbol | |
ID | 4313996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 2132462 |
End bp | 2133607 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638152948 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_776988 |
Protein GI | 115359850 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.140418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00222912 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAATCGAC ATCGGAACAA GACGGCATGC GCAATCGCGG CCGCGCTGGC GTGCGCATGG TCCGCGCTGC CCGCGCATGC GGACGAGATC GTGCGCATCG GGCACGTCGC GCCGCTGACC GGTGCGATCG CGCACCTCGG CAAGGACAGC GAGAACGGCG CTCGGCTCGC GGTCGAGGAG ATCAATGCGA AGGGGCTCGT GATCGGCGGC AGGAAGGTCA CGCTGCAACT CGACGCGCAG GACGACGCGG GCGACCCGCG CACCGCGACG CAGGTCGCGC AGCGGCTCGT CGACGACAAG GTGGTCGGCG TCGTCGGCCA TCACAACTCG GGCACGTCGA TTCCGGCGTC GCGCGTCTAT CGCGACGGCG GCGTCGTGCA GATCTCGCAG GCCGCGACCA ACCCGATGTA CACGCAGCAG GGCTTCAAGA CGACCTATCG CGTCGTCGCG ACCGATGCGC AGCAAGGGCC CGCGCTGGCG ATGTATGCGG CGAAGCAGCT GGGCATCAGG ACGGTGGCCG TGGTCGACGA TGCGACCGCG TACGGGCAGG GCCTCGCGAC CGAGTTCGAG AAGGCGGCGA AATCGGCCGG GATGAAGGTC ATCTCGCGCG ACGCGACCAA CGACAAGGCG ATCGACTTCC GCGCGATCCT CACGAAGATC AAGGGCGAGA ACCCCGATGC GATCATGTAC GGCGGGATGG ATGCGACGGG CGGCCCGCTC GCGAAGCAGG CGCGCCAGCT CGGCCTGCGC GCGAAGATCC TCGCCGGCGA CGGCGTGTGC TCGCCCGACC TGCCGAAGCT AGCGGGTCCG GCGTCGGACA ATGTCGTGTG TTCGGAAGCC GGCATCGCGC TCGAGAAGAT GCCGGGCGGC GCGGCGTTCG TGAAGCGTTA CGAAGCGCGT TACCACCAGC CGATGCAGGT GTACGCGCCG TTCTCGTACG ACGCGGTGTA CATCATCGTC GACGCGATGC AGCGCGCGAA TTCGACGGAC GCAGCCAAGG TGCTGGCCGC GATGCCGGCG ACCGACTATC GCGGCGTGAT CGGCGAAACG AGCTTCACGC CGCAGGGCGA CCTGAAGCAC GGCGCGATCT CGGTGTTCAC GTACAGGAGC GGCAGGAAGG CGCTGCTCGA TATCGTCAGG ATGTGA
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Protein sequence | MNRHRNKTAC AIAAALACAW SALPAHADEI VRIGHVAPLT GAIAHLGKDS ENGARLAVEE INAKGLVIGG RKVTLQLDAQ DDAGDPRTAT QVAQRLVDDK VVGVVGHHNS GTSIPASRVY RDGGVVQISQ AATNPMYTQQ GFKTTYRVVA TDAQQGPALA MYAAKQLGIR TVAVVDDATA YGQGLATEFE KAAKSAGMKV ISRDATNDKA IDFRAILTKI KGENPDAIMY GGMDATGGPL AKQARQLGLR AKILAGDGVC SPDLPKLAGP ASDNVVCSEA GIALEKMPGG AAFVKRYEAR YHQPMQVYAP FSYDAVYIIV DAMQRANSTD AAKVLAAMPA TDYRGVIGET SFTPQGDLKH GAISVFTYRS GRKALLDIVR M
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