Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5086 |
Symbol | |
ID | 4313977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 2112002 |
End bp | 2113642 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638152929 |
Product | diguanylate phosphodiesterase |
Protein accession | YP_776969 |
Protein GI | 115359831 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCCGCG CCAATCCATC GACCGGTTCG ACCTGCATTG CCATGCATAC AACAACAAGC GCGATCGGAG AATCAGCCCC GCCGGGCTCA AAACCCGCGT TCCAGCGCAG CGGTGCGTGG CCGCATATCG TCTTCTCGCT TGCGTTGATC ATCTGCATCC TCGTGCTCTT GATGGCGCTC GTCGTGGCCG AACGCCTCGC ACGCGAATCG GTAGCCGAGC ACGAACGCGT CGTCGCGAAC GACATCGTGA TCTCGGTCGA CCGCATCCTC GACGGCGTGC GCTCGCGGCA CCCGGCCGAA TTGACCGCGC TGGTCGGGCG ACCCTGCGCG ACAGTCTTCA GGACGCTCGC CGAAGTAGGC ACTCACCTGC GCTATCTGCG CGCCGTCGCG CTGGCCAACG ACGGTCGCGT CACGTGCTCG TCGGCGCTGG GCTCGATCGA CGTGTCGCTG GACGCGTATG TGCACGCCCC GCCACCGGGG ATGACGGCCA TCACGCTGCT TCGGCAGACC CCGTTCCAGC ATCGCGTCCC GGTGCTGGCG GTGTTTCGTG CAACCGCGCC CGCCTCGGGC GTGCTTTATC TGATCGAAGG CGACTATGTG GCCGACATGC TGTCGCACGG CGCGCGCTTC GGCGCGGAAA CCGCGATGCT GTCGGTCAAC GGCGCGGGCG GTCTCGATCA GCATGGCGAG TTCGTGCCGG CGTTCCACGC GGCCCCGTCG GCCGGCAGCA CGATCGCCTC GGGCGCGTGG CCGTTCACGG TTTCCGTCAC GTCGTCGGAA TCCTATGTTC AGCAGGTGGA ACGGCACTAT CGGCTGATTT GCGTGACGAT CGCGCTGCTG GTGAACGGCC TCGTCGCGGC CGCGTACCTG CTCGCGATGG CGCCGCGCCG GCTGTTGCTG AAGGCCGTGC GCAACGCGTT GAAGCGCAAC GAGCTTCACG TCGTGTATCA GCCGATCGTC GACGTCGAAA CGCGCAGGAC CATCGGCGTC GAGGCGCTGC TGCGCTGGCA TCATCCGAAA TGGGGGCTGA TCAGCCCGGC CGTGTTCGTC CCGCAGGTCG AATCGAGCGC GATCCTGCCG AAGGTGACCG AGTTCGTGCT GCGCACGGCC GTGTCGGAGC TGACCGCGCT CACGCCGGCG ATGCCGCTGC GCATCGCGAT CAACGTCGCG CCGAAGGATC TCGAACGCCC GCGCTTCGTA TCCGTCGTCG AAGACGCGAT CCGCGGGCTT CCGCCGGGGT TCACGCTGGT GCTCGAAGTG ACCGAGCGCA TCCTGCTCGA AAAGAATGCG CGCACCACCG CGATGTTTGC CGCGCTGCGC GCGACGGGCG CGCGATTCGC GATCGACGAT TTCGGCACGC ATCACAGCAA CCTCGACATG CTGTCGCGCT TTCCGTTCGA CTACGTGAAG ATCGATCGCC AGTTCATTTC GCAGCTGACG ACCGGCAATG CCAGGCTGAT CGAAGGCATC GCGGCCGTCG CGCACCACTA CGAGCTGAAG ATCATCGCCG AGGGCGTGGA GACGGAAGAG CAGCATCGCG CGCTGCATGC GGTCGGGATT CAGTATGCAC AGGGCTACCT GTATCAGCGG CCGCAGCGGC CGACCGACCT GAAGCGGGAT TTCGCGCCGA TGCCGGCTTA G
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Protein sequence | MLRANPSTGS TCIAMHTTTS AIGESAPPGS KPAFQRSGAW PHIVFSLALI ICILVLLMAL VVAERLARES VAEHERVVAN DIVISVDRIL DGVRSRHPAE LTALVGRPCA TVFRTLAEVG THLRYLRAVA LANDGRVTCS SALGSIDVSL DAYVHAPPPG MTAITLLRQT PFQHRVPVLA VFRATAPASG VLYLIEGDYV ADMLSHGARF GAETAMLSVN GAGGLDQHGE FVPAFHAAPS AGSTIASGAW PFTVSVTSSE SYVQQVERHY RLICVTIALL VNGLVAAAYL LAMAPRRLLL KAVRNALKRN ELHVVYQPIV DVETRRTIGV EALLRWHHPK WGLISPAVFV PQVESSAILP KVTEFVLRTA VSELTALTPA MPLRIAINVA PKDLERPRFV SVVEDAIRGL PPGFTLVLEV TERILLEKNA RTTAMFAALR ATGARFAIDD FGTHHSNLDM LSRFPFDYVK IDRQFISQLT TGNARLIEGI AAVAHHYELK IIAEGVETEE QHRALHAVGI QYAQGYLYQR PQRPTDLKRD FAPMPA
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