| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4843 |
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| Symbol | |
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| ID | 4313734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 1841241 |
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| End bp | 1843223 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638152686 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_776726 |
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| Protein GI | 115359588 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.418321 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCTCT CCTCGACCAA GCCCGTCGGC CCGGCCGACC GCACGGTACG CCCGCGCATC
TGGGCGATGG GCATCAGCCG CCTGCGCGAC CTGTTTCGCG AGATCGCCGG TGAATTCGAC
GAACGCGCCG ACGTGCGCAT CGTCACGCGG GCCTACGAAG ACGCGCTGAG CGCGATCGCG
GAAGCCGGCA CCGCGCGGCC CGACGTGATC GTCGCGGCCG GCTCGAACGG CGGCTTCCTG
AAAACGCGTG CGCAGGTGCC GGTGGTAGTC GTGTCGCCGA CCGGCTTCGA CGTGATGCAG
GCGCTCGCGC GCGCACGGCG CGACGCGTCG CGGATTGCCC TCGTCAGCGC CGGCGAGACG
CCGCCGGAGG TGCGCCGCTT CGTCGCCGCC TACGGCCTCG ACGTGCAGTT TGCGTCATAT
CAGTCCGCTC AGGAAGCGGA AGCCTGCGTG CACGACCTGC ACGACCGCGG CATCGAGACG
ATCGTCGGCC CCGGCCTCGT CACCGATCTC GCGGCGAGTG CCGGCATGGG CGCGGTGTTC
CTGTATTCGC ACGCGTCGGT GCGCAAGGCG GTCGAAACGG CACTCGAAGT CGCGTACGCG
ACGCACGCCG AGGCGTTTCG CCGTCAGCGC CTCGACAACC TGTTGCAGCA CCTGCGCGAC
GGCGTGGTCG CGCTCGACGC GCGCGGTCAC GTCGAGGCGA TCAACGAGCG GCTCGCGTCG
GCGCTCGGGG TCGAACCGGC GGCGGCCGTC GGCCGCGCGC TCGTCGACCT GCGGCCCGAG
CTGCGCACGC TGCGCGGCGA GGATGGCGAC GCGCTCGCGA CGGTGCGCGG CGTGCGCTAC
GTCGTGCATC GCGGGCCGCT CGTCGATCGC GGCGTCACGT CGGGCAGCGT GCTGACCTTC
CAGGAATCGC GCGCGGTCGA ACGGCTCGAC CGCGCGCTGC GTTCGCAGCC GAATACGCAG
CAGTTCGCGG CGCGCTACGC ACTCGACGAC GTGGTCGGCG CGTCCGCGCC GATGGCGCGC
GTGCGCGACC TCGTGCGCCG CTACGCGAAA TCCGACGCGA CCGTGCTCGT GCTCGGCGAG
AGCGGCACCG GCAAGGAGAT GATCGCGCAG AGCCTGCACG CGCTGTCCGT GCGGCGCAGC
TATCCGTTCG TCGCGATCAA CTGCGGCGCG TTTCCGGAAG CGCTGCTCGA GAGCGAGCTG
TTCGGTTATG AGGAAGGCGC GTTCACCGGC GCCCGGCGCG GCGGCAAGAC CGGGCTGTTC
GAGGCCGCGC ACCGCGGCAC GCTGTTTCTC GACGAGATCG GCGAGATGCC GCCGTCGCTG
CAAAGCCGAC TGCTGCGCGT GCTGCAGGAG CGTGAGGTGA TCCGCCTCGG TTCGACCGAG
CCGATCCGCA TCGACGTGCG CGTGATCGCC GCGACGCACC GGCCGCTGCT CGCGGCCGTC
GAAGCCGGCA CGTTCCGCGC GGACCTGTAT TACCGGCTCA ACATCCTGAA CATCGGCCTG
CCGCCGCTGC GCGAGCGCGC GGCCGACATT CCGGCGCTCG CGGCCACGCT GCTCGTGCAG
GCCGCGCGGC GCGAGCCGCG GCTGGCCGAA CGCGTGCGCG AGGTCGACGA CGCGATGCGC
GTGCTCGGCG CGACGCAGGC GACGCTCGCC CGCTACCGCT GGCCCGGCAA CGTGCGGGAA
TTGCAGAACG TGGTCGAGCG GATCGCGGTG GAACTGGCCG AGGAAGTCGA CGAGCAGGAT
CCGGGCGCCC CGTGCGCCGC GCTCGCGCCC GACGCGCTGC AGGCGATCGC GCCGGAGTTG
TTCGCGACAC CGCCCGAGGC CGCCGATCCC GACGACGCGC AGACACTGCA AGCACGCCGC
CGCCGCGCGG AAGCCGACGA GATCCGCGCG GTGCTCGATG CGTGCGGCGG CGACCGCGAT
CGCGCGTGTG CGATGCTGGG CATCAGCAAG ACGACGCTGT GGCGGAAGCT TTCGGCGAAG
TAG
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| Protein sequence | MDLSSTKPVG PADRTVRPRI WAMGISRLRD LFREIAGEFD ERADVRIVTR AYEDALSAIA
EAGTARPDVI VAAGSNGGFL KTRAQVPVVV VSPTGFDVMQ ALARARRDAS RIALVSAGET
PPEVRRFVAA YGLDVQFASY QSAQEAEACV HDLHDRGIET IVGPGLVTDL AASAGMGAVF
LYSHASVRKA VETALEVAYA THAEAFRRQR LDNLLQHLRD GVVALDARGH VEAINERLAS
ALGVEPAAAV GRALVDLRPE LRTLRGEDGD ALATVRGVRY VVHRGPLVDR GVTSGSVLTF
QESRAVERLD RALRSQPNTQ QFAARYALDD VVGASAPMAR VRDLVRRYAK SDATVLVLGE
SGTGKEMIAQ SLHALSVRRS YPFVAINCGA FPEALLESEL FGYEEGAFTG ARRGGKTGLF
EAAHRGTLFL DEIGEMPPSL QSRLLRVLQE REVIRLGSTE PIRIDVRVIA ATHRPLLAAV
EAGTFRADLY YRLNILNIGL PPLRERAADI PALAATLLVQ AARREPRLAE RVREVDDAMR
VLGATQATLA RYRWPGNVRE LQNVVERIAV ELAEEVDEQD PGAPCAALAP DALQAIAPEL
FATPPEAADP DDAQTLQARR RRAEADEIRA VLDACGGDRD RACAMLGISK TTLWRKLSAK
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