Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_4842 |
Symbol | prpB |
ID | 4313733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 1840177 |
End bp | 1841070 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638152685 |
Product | 2-methylisocitrate lyase |
Protein accession | YP_776725 |
Protein GI | 115359587 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2513] PEP phosphonomutase and related enzymes |
TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACA CGCATCTTCA GAGCGCCGGC GCGAAATTCC GCGCGGCAGT CGCGGCCGAG CAGCCGCTGC AGGTGGTCGG CGCGATCACC GCGTACGCGG CCAAGATGGC GCAGGCCGTC GGCTTCAAGG CCGTCTACCT GTCGGGCGGC GGCGTCGCCG CGAATTCGCT CGGGATCCCC GATCTCGGCA TCAGCACGAT GGAAGACGTG CTGATCGACG CGACCCGGAT CACCAACGCG ACCGACCTGC CGCTGCTGGT CGACATCGAT ACTGGCTGGG GCGGCGCGTT CAACATCGCG CGCACGGTCC GCTCGTTCAT CAATGCCGGT GTCGCGGCGG TTCACCTCGA AGACCAGGTC GGCCAGAAGC GCTGCGGCCA TCGTCCGGGC AAGGAAGTCG TGCCGCTCGA GGAAATGGTC GATCGCGTGA AGGCCGCGGT CGATGCGCGC ACCGACGACC AGTTCGTGAT CATGGCCCGC ACCGACGCGG CCGCCGCCGA AGGGATCGAC GCCGCGATCG AGCGCGCGAT TGCCTACGTG GAAGCCGGCG CCGACATGAT CTTCCCGGAA GCGATGAAGA CGCTCGACGA TTACCGTCGC TTCAAGGCAG CCGTGAAGGT GCCCATCCTC GCGAACCTGA CCGAATTCGG CTCGACGCCG CTGTTCACGG TCGACGAGCT GCGCGAGGCG AAAGTCGACA TCGCGCTGTA CTGCTGCGGC GCGTATCGCG CGATGAACAA GGCCGCGCTG AACTTCTACG AGACGCTGCG CCGCGACGGC ACGCAGAAGG CCGCCGTGCC GACCATGCAG ACCCGCGCGG AGCTGTACGA CTTCCTCGGC TATCACGAAT ACGAGCGCAA GCTCGACGAA CTGTTCGCGC AGGGCAAGAA GTAA
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Protein sequence | MSNTHLQSAG AKFRAAVAAE QPLQVVGAIT AYAAKMAQAV GFKAVYLSGG GVAANSLGIP DLGISTMEDV LIDATRITNA TDLPLLVDID TGWGGAFNIA RTVRSFINAG VAAVHLEDQV GQKRCGHRPG KEVVPLEEMV DRVKAAVDAR TDDQFVIMAR TDAAAAEGID AAIERAIAYV EAGADMIFPE AMKTLDDYRR FKAAVKVPIL ANLTEFGSTP LFTVDELREA KVDIALYCCG AYRAMNKAAL NFYETLRRDG TQKAAVPTMQ TRAELYDFLG YHEYERKLDE LFAQGKK
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