Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_4698 |
Symbol | |
ID | 4313590 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 1684873 |
End bp | 1688088 |
Gene Length | 3216 bp |
Protein Length | 1071 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638152542 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_776582 |
Protein GI | 115359444 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.294616 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.444302 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATTT CCAAATTTTT TATCGACCGG CCGATCTTTG CAGGAGTCCT ATCGGTGATC ATCCTGCTCG GCGGGGTGAT CGCGATGTTC CTGCTGCCGA TTTCGGAGTA TCCGGAAGTC GTGCCGCCTT CCGTGATCGT GAAGGCGCAA TACCCGGGCG CGAACCCGAA AGTGATCGCC GAGACGGTCG CGTCGCCGCT TGAAGAGCAG ATCAACGGCG TCGAGGACAT GCTCTACATG CAGTCGCAGG CAAACAGCGA CGGCAACATG ACGATCACCG TCACGTTCAA GCTCGGCACC GATCCGGACA AGGCCACGCA GCTCGTGCAG AACCGCGTGA ACCAGGCGCT GCCGCGCCTG CCGGAAGACG TGCAGCGGCT CGGCATCACC ACGGTGAAGA GCTCGCCGAC GCTGACGATG GTGGTCCACC TGATCTCGCC GGACAACCGC TACGACATGA CCTACCTGCG CAACTACGCG CTGATCAACG TGAAGGATCG CCTGTCGCGG ATCCAGGGCG TCGGCCAGGT GCAGCTGTGG GGTTCGGGCG ACTACGCGAT GCGCGTGTGG CTCGATCCGC AGAAGGTCGC GCAGCGCGGG CTGGCCGCCG AGGACGTCGT GCGGTCGATC CGCGAGCAGA ACGTGCAGGT CGCGGCCGGC GTGATCGGCG CGTCGCCGTC GTTGCCGGGC ACGCCGCTGC AGCTGTCCGT GAACGCGCGC GGCCGTCTGC AGACGGAAGA CGAGTTCGGC GACATCGTCG TGAAGACGAC GCCGGACGGC GGCGTCACGC ATCTGCGCGA CATCGCGCGC ATCGAGCTCG ACGCGTCCGA GTACGGGCTG CGCTCGCTGC TCGACAACAA GCCGGCCGTC GCGATGGCGA TCAACCAGTC GCCGGGCGCG AACTCGCTGC AGATCTCCGA CGAAGTGCGC AAGACGATGG CCGAGCTGAA GCAGGACATG CCGGCCGGTA TCGACTACAA GATCGTCTAT GACCCGACGC AGTTCGTGCG TTCGTCGATC AAGGCCGTCG TGCATACGCT GCTCGAGGCG ATCGCGCTGG TCGTGATCGT CGTGATCGTG TTCCTGCAGA CCTGGCGCGC GTCGCTGATT CCGCTGATCG CGGTGCCGGT GTCGATCATC GGCACGTTCT CGCTGCTGCT CGGCTTCGGC TATTCGATCA ACGCGTTGTC GTTGTTCGGG ATGGTGCTGG CGATCGGTAT CGTGGTCGAC GATGCGATCG TGGTGGTCGA GAACGTCGAG CGCAACATCG AAAGCGGGAT GAACGCGCGG CAGGCGACCT ACAAGGCGAT GCAGGAAGTG AGCGGGCCGA TCATCGCGAT CGCGCTGACG CTCGTCGCCG TGTTCGTGCC GCTCGCGTTC ATGTCGGGCC TGACCGGCCA GTTCTACAAG CAGTTCGCGA TGACGATCGC GATCTCGACG GTGATCTCGG CGTTCAACTC GCTGACGCTG TCGCCGGCGC TGTCCGCGAT CCTGCTGAAG GGTCATGGCG ACAAGGAGGA CTGGCTCACG CGCGTGATGA ACCGCGTGCT CGGCGGTTTC TTCAAGCGCT TCAACAAGGT GTTCCATCGC GGCGCGGAGA ACTACGGCCG CGGCGTGCGC GGCGTGCTGT CGCGCAAGAC GCTGATGCTC GGCGTGTACC TCGTGCTGGT GGGCGCGACC GTGCTGGTGT CGAAGATCGT GCCGGGCGGT TTCGTGCCCG CGCAGGACAA GGAATACCTG ATCGCGTTCG CGCAGCTGCC GAACGGCGCG TCGCTCGACC GCACCGAGAA GGTGATCCGC GACATGGGCT CGATCGCGTT GAAGCAGCCG GGCGTCGAGA GCGCGGTCGC GTTCCCGGGG CTGTCGGTGA ACGGCTTCAC GAACAGCTCG AGCGCGGGCA TCGTGTTCGT CACGCTCAAG CCGTTCTCGG AACGGCACGG CAAGGCGCTG TCGGCCGGCG CGATCGCGGG TGCGCTGAAC CAGCAGTACG GGGCGATCAA GGACTCGTTC GTCGCGGTGT TCCCGCCGCC GCCGGTGCTT GGCCTCGGCA CGCTCGGCGG GTTCAAGATG CAGATCGAGG ATCGTGGCGC AGTGGGCTAC GCGAAGCTGT CGGACGCGAC CAACGACTTC ATCAAGCGCG CGCAGCAGGC GCCTGAACTG GGCCCGTTGT TTACGAGCTA CCAGATCAAC GTGCCGCAGC TCAACGTCGA TCTCGACCGC GTGAAGGCGA AGCAGCTCGG CGTGCCGGTC ACCGACGTGT TCAACACGAT GCAGGTGTAT CTCGGCTCGC TGTACGTGAA CGACTTCAAC CGCTTCGGGC GCGTGTACCA GGTGCGCGTG CAGGCCGATG CGCCGTTCCG CCAGCGCGCG GACGACATCC TGCAGCTGAA GACGCGCAAC GACAAGGGTG AGATGGTGCC GCTGTCGTCG CTCGTCACGG TGACGCCGAC GTTCGGCCCG GAAATGGTCG TGCGCTACAA CGGCTACACG GCGGCCGACA TCAACGGCGG CCCGGCGCCG GGCTTCTCGT CGGGGCAGGC GCAGGCCGCG GTCGAGCGCA TCGCTCATGA AACGTTGCCG CGCGGCGTGC GGTTCGAGTG GACCGACCTC ACGTACCAGC AGATCCTAGC GGGCGATTCG GCGATGTGGG TGTTCCCGAT CAGCGTGCTG CTCGTGTTCC TGGTGCTCGC CGCGCTGTAT GAAAGCCTGA CGCTGCCGCT CGCGGTGATC CTGATCGTGC CGATGAGCAT TCTGTCGGCA CTCACGGGCG TGTGGCTCAC GCAGGGCGAC AACAACATCT TCACGCAGAT CGGCTTGATG GTGCTGGTGG GGCTGTCGGC GAAGAACGCG ATCCTGATCG TCGAATTCGC GCGCGAACTG GAGCATGACG GCAGGACGCC GCTCGAGGCC GCGATCGAGG CGAGCCGGCT GCGGCTGCGC CCGATCCTGA TGACGTCGAT CGCATTCATC ATGGGCGTCG TGCCGCTCGT CACGTCGACG GGTGCGGGCT CGGAGATGCG GCATGCGATG GGTATCGCGG TGTTCTTCGG GATGCTCGGC GTGACGCTGT TCGGGCTGAT GCTGACGCCG GTGTTCTACG TGGTGCTGCG CACGCTCGCG GGCGGCAAGA TCCACGTCGC CGGGAAGGAC TCCGCCGGCT ATGGCGCGTC GGGTTCGGGC GTGCCGGCTA CCGGCGTGCC GGCTTCGGAT GCTTGA
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Protein sequence | MNISKFFIDR PIFAGVLSVI ILLGGVIAMF LLPISEYPEV VPPSVIVKAQ YPGANPKVIA ETVASPLEEQ INGVEDMLYM QSQANSDGNM TITVTFKLGT DPDKATQLVQ NRVNQALPRL PEDVQRLGIT TVKSSPTLTM VVHLISPDNR YDMTYLRNYA LINVKDRLSR IQGVGQVQLW GSGDYAMRVW LDPQKVAQRG LAAEDVVRSI REQNVQVAAG VIGASPSLPG TPLQLSVNAR GRLQTEDEFG DIVVKTTPDG GVTHLRDIAR IELDASEYGL RSLLDNKPAV AMAINQSPGA NSLQISDEVR KTMAELKQDM PAGIDYKIVY DPTQFVRSSI KAVVHTLLEA IALVVIVVIV FLQTWRASLI PLIAVPVSII GTFSLLLGFG YSINALSLFG MVLAIGIVVD DAIVVVENVE RNIESGMNAR QATYKAMQEV SGPIIAIALT LVAVFVPLAF MSGLTGQFYK QFAMTIAIST VISAFNSLTL SPALSAILLK GHGDKEDWLT RVMNRVLGGF FKRFNKVFHR GAENYGRGVR GVLSRKTLML GVYLVLVGAT VLVSKIVPGG FVPAQDKEYL IAFAQLPNGA SLDRTEKVIR DMGSIALKQP GVESAVAFPG LSVNGFTNSS SAGIVFVTLK PFSERHGKAL SAGAIAGALN QQYGAIKDSF VAVFPPPPVL GLGTLGGFKM QIEDRGAVGY AKLSDATNDF IKRAQQAPEL GPLFTSYQIN VPQLNVDLDR VKAKQLGVPV TDVFNTMQVY LGSLYVNDFN RFGRVYQVRV QADAPFRQRA DDILQLKTRN DKGEMVPLSS LVTVTPTFGP EMVVRYNGYT AADINGGPAP GFSSGQAQAA VERIAHETLP RGVRFEWTDL TYQQILAGDS AMWVFPISVL LVFLVLAALY ESLTLPLAVI LIVPMSILSA LTGVWLTQGD NNIFTQIGLM VLVGLSAKNA ILIVEFAREL EHDGRTPLEA AIEASRLRLR PILMTSIAFI MGVVPLVTST GAGSEMRHAM GIAVFFGMLG VTLFGLMLTP VFYVVLRTLA GGKIHVAGKD SAGYGASGSG VPATGVPASD A
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