| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4575 |
|---|
| Symbol | |
|---|
| ID | 4313467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1529890 |
|---|
| End bp | 1537371 |
|---|
| Gene Length | 7482 bp |
|---|
| Protein Length | 2493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638152414 |
|---|
| Product | hemagluttinin domain-containing protein |
|---|
| Protein accession | YP_776459 |
|---|
| Protein GI | 115359321 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA CATACCGCTC GATCTGGAAC GAAGCCCTTG GCGCCTGGGT CGCGGCATCC
GAACACGATT CGGCACGGGG TAAGCCGAAC AAGTCGGCCG TTGTGGTCGC CGCAGTCGCG
GCACTGACGA TCGGGCTGCC CGGCTTCGCC GAGGCCAATA CGCTCAACAC ACAGCAGACC
TGCTTTACGG GCAGCAACAG CGCGGTCGGC CGCGTGAATC CGGGCGGCAC GCAAAACCAG
GCCGGCGACG GCTCCGGCAC GTATTCGGTC GTGGCCGGGT GTAACTCCAA CGGCAACGGC
TGGACCGGCG TTACGGTTTA TGGCTCGTTC GCACAGGCGA CCGGCAACGG CGCGGTCGCC
ACCGGCATGC AGTCGTCGGC GGGCCTGTGG GGCGTCGCGG CCGGCCTCGA AACCACCGCC
AGCGGCACCG GTGCGACCGC CCTCGGCTTC GGCTCGACGG CGAGCGCGCT GAACTCGGTC
GCGATCGGCG GCGCGGGCGG CAACGGTACG ACGCCGCTCT CGCAGGCAAA CTCGACGCTC
GCGTCGGGCG CAGGCGCGAT CGCAATCGGC AGCAACGCAA CGAAGGGCGC GCAGTCGGCC
GCCTCCGACG GCATCGCGAT CGGCGGACAG TCGTCCGTCG CATCGACCGC CACGTCGGGT
ATCGCCATCG GCCGCGGCGC GACCGTCAAT GGGGCGTATG GCATCGCACA AGGTGACGGC
GTCATCTCGG GCGCGACGGG CCAGAACGTG GCGATCGGTT CGTCCGGCAC GACCGCGAAC
AGCGCCACGG CTACCGGCGG CGCGGTCGCA ATCGGCAGAG GCCAGGTTGC AAGCGGCGAC
GGCGCCGTTG CGATCGGCGA TCCGAACAGC GCGACCGGCA CGGGCGCACT GGCGATCGGC
GCGAACAACA CGTCGAGCGG TTCGGGCGCC CTCGCGCTCG GCAATGGCAA CTCGGCGAGC
GGCACGGGCG CCGTCGCGCT GGGCAACAGC AGCACGGCGA CCAACAGCTC GGTTGCCATC
GGCAACGCCG CGACCTCGAA CGTCGCGAAT TCGGTCGCAC TCGGCGGCGG TTCGGTGACG
ACCAGCGCCG CATCGGCGAC GACGGGCGGC ACGACGACCG TCAGCAACAC AACGATCGGT
GGCCAGACGT TCGGCAACTA CGCGGGCGCG GGATCGGCAG GCGGCGTCGT CAGCGTCGGT
CAGCCGAATG CGGAACGCCG GATCCAGAAC GTCGCGGCGG GCCTCGTCAG CGCGACGAGC
ACAGACGCGA TCAACGGCAG CCAGCTCTTC GCCGTGGCAA GCACCACGAC GTCGAGCATT
ACGAGCTTGT CGACTTCCGC GTCGACTGGT TTGTCGTCGG CGAATAGCTC GATCTCGTCA
CTGTCGACTT CCACTTCGAC CGGGATCAAC TCGTTGTCTA CCGGCCTGAG CTCGACCAAT
AGCTCGGTTA CGTCGCTTTC GTCGTCAACG TCCACCGGGC TGTCGTCGGC TAACAGCTCG
ATCGGCTCGC TCTCCACGTC GACCTCGACG GGCATCAACT CGCTGTCGAC CGGCCTCAGC
TCCACCAATA GCTCGGTTAC GTCGCTTTCG TCGTCCGCGT CCACCGGACT CTCGTCGGCT
AATAGCTCGA TTGGCTCGCT CTCCACGTCG ACCTCGACCG GCATCAACTC GCTGTCGACC
GGCCTCAGCT CCACCAATAG CTCGGTTACG TCGCTTTCGT CGTCAACGTC CACCGGACTG
TCGTCGGCTA ACAGCTCGAT CGGTTCGCTC TCCACCTCGA CCTCGACGGG CATCAACTCG
CTGTCGACCG GCCTCAGCTC GACCAATAGC TCGGTTACGT CGCTTTCGTC GTCCACGTCG
ACCGGTCTCT CGTCGGCTAA TAGCTCGATC GGCTCGCTCT CGACTGGCCT GAGCTCGACC
AACAGCTCGG TTACGTCGCT CTCGTCGTCC ACGTCCACCG GACTCTCGTC GGCTAATAGC
TCGATCGGCT CGCTCTCCAC GTCGACCTCG ACGGGCATCA ACTCGCTGTC GACCGGCCTC
AGCTCCACCA ATAGCTCGGT TACGTCGCTT TCGTCGTCAA CGTCCAGCGG ACTCTCGTCG
GCTAATAGCT CCATCGGTTC GCTCTCGACC GGCCTCAGCT CGACCAACAG CTCCGTTACT
TCGCTGTCGT CGTCGACCTC GACGGGGCTT TCGTCGGCAA ACAGCTCGAT CTCGTCGCTG
TCTACCTCCA CTTCGACGGT TCTCAGCTCC ACGAACAGCT CGGTTACTTC ACTTTCGTCG
TCGACATCGA CGGGTCTTTC GTCGGCAAAC AGTTCGATCG GCTCGCTCTC GACTTCCACT
TCGACGGGTC TCAGCTCGAC CAATAGCTCC GTTGCTTCAC TGTCGACTTC CACCTCGACC
GGCATCAATT CCTTATCCAC GGGCCTGAGC TCGACCAACA GCTCAGTTAC GTCGCTCTCG
TCGTCGACCT CGACGGGTCT TTCGTCGGCA AACAGCTCGA TCGGCTCGCT CTCGACTTCC
ACTTCGACGG GTCTCAGCGC GACCAATAGC TCCGTTGCTT CACTGTCGAC TTCCACCTCG
ACCGGAATCA ACTCCTTGTC CACGGGACTG AGCTCCACCA ACAGCTCCGT CACTTCACTT
TCGAGCTCCA CGTCGACGGG TCTGTCTTCG GCTAACAGCT CGATCTCGTC GCTGTCGACT
TCCACCTCGA CAGGTCTCAG TTCGACAAAC AGCTCCGTTG CTTCGCTGTC GACTTCCACC
TCGACCGGCA TCAACTCGTT GTCCACGGGC CTGAGCTCCA CCAACAGCTC CGTCGTTTCG
CTGTCGACCT CCACGTCGAC CGGCCTCTCG TCGGCAAACA GCTCGATCGG TTCGCTGTCG
ACGGGCCTCA GCACGGTCAC GACCAAAACC GACAATCTCG GCAACAGCAC CGCCGCGGCC
CTCGGCGGCG GCGCGAGCTA CAACCCGGCG ACCGGCTCGG TTTCCGCTCC GTCGTACACC
ACGTACAACG CGAATGGGAC GACGTCGACC GCCAACAGTG TCGGCTCGGC AATCGACAGC
ATCAACAACC AGGGCATCAA GTACTTCCAC GCGAATTCGA CGGGCACGGA CAGCCAGGCG
CTCGGCACCG ACTCGGTCGC GATCGGTCCG CACGCCATCG CCAACCACAC CGGCGACGTC
GCGCTCGGCA GCGGCTCCGT CACCGGCACC CCGAACGCAA CGCCGACCGG TACCGTCGGC
GGCGTGACGA GCACGTTCGC GGGCGGCAAT CCGACCAGCG TCGTGAGCGT CGGCGACGCG
AGCACGGGCA CCACGCGTCA GATCACCAAT GTCGCGGCAG GTCAAATCAC GGCGACCAGC
ACCGACGCGA TCAACGGCTC CCAGCTCTTC GCGACCAATT CGGCCGTGGA TTCGCTGTCG
ACGACGGTGT CGTCATCCAG CAACGCAATC GCGTCGCTGT CGACCGGCAT CACTTCGTTG
TCGACAGGCC TCAGCTCGAC TAACAGCTCG GTTACGTCGC TCTCGTCGTC CGCGTCGACC
GGCCTCTCGT CGGCTAATAG CTCGATCACA TCGCTCTCCA CGTCGACTTC GACCGGTATC
AACTCGCTGT CGACTGGCCT GAGCTCGACC AACAGTTCGG TTACCTCACT GTCGACCTCC
ACGTCGACGG GTCTCTCGTC GGCTAATAGC TCGATCACGT CGCTCTCCAC GTCGACCTCA
ACCGGTATTA ACTCGTTGTC GACCGGTCTG AGCTCCACCG ATAGCTCGGT CGCCTCACTG
TCGACCTCGA CGTCGACCGG CCTGTCGTCG GCGAATAGCT CGATCTCGTC GCTCTCCACG
TCGACCTCAA CCGGTATTAA CTCGTTGTCG ACTGGCCTGA GCTCGACCAA CAGTTCGGTT
ACCTCACTGT CGACCTCCAC GTCGACGGGT CTCTCGTCGG CTAATAGCTC GATCACGTCG
CTCTCCACGT CGACTTCGAC CGGTATCAAC TCGCTGTCGA CTGGCCTGAG CTCGACCGAC
AGCTCGGTGG CGTCGCTGTC GACTTCGACG TCGACCGGCC TGTCGTCGGC GACGAGCTCG
ATCGGTTCGC TGTCTACGTC GACTTCGACG GGCATCAACT CGCTGTCCAC GGGCCTCAGC
TCCACCGACA GCTCGGTGGC TTCGCTGTCG ACCTCCACGT CGACCGGCAT CTCGTCGGCA
ACCAGCTCGA TCGGTTCGCT GTCCACGTCG ACTTCGACGG GCATCAATTC GCTGTCCACT
GGCCTCAGCT CGACCAATAG CTCGGTGGCT TCGCTGTCGA CTTCCACGTC GACCGGCCTC
TCGTCGGCGA CGAGCTCCAT CGGTTCGCTG TCGACGGGCC TGAGCTCGAC CGATAGCTCC
GTCGCTTCGC TGTCGACTTC AACGTCGACG GGTCTGTCGT CGGCGACGAG CTCAATCAGT
TCGCTGTCCA CGGGCCTCAG CTCCACCGAC AGCTCGGTGG CGTCGCTGTC GACTTCCACG
TCGACTGGCC TCTCGTCGGC CACAAGCTCG ATCGGTTCGC TGTCCACGTC GACCTCGACG
GGCATCAACT CGTTGTCGAC GGGTCTGAGC TCCACGGATA GCTCGGTCGC TTCGTTGTCG
ACCTCGACGT CGACCGGCCT CTCGTCGGCG ACCAGCTCGA TAGGTTCGCT GTCCACGTCG
ACTTCGACCG GTATCAACTC GTTGTCGACT GGCCTCAGCG CGACCGACAG CTCGGTTGCT
TCGCTGTCGA CTTCCACGTC GACGGGCCTC TCGTCGGCCA CAAGCTCGAT CGGTTCGCTG
TCCACGTCGA CCTCGACGGG CATCAACTCG TTGTCGACGG GTCTGAGCTC CACGGATAGC
TCGGTCGCTT CGTTGTCGAC CTCGACGTCG ACCGGCCTCT CGTCGGCGAC CAGCTCGATA
GGTTCGCTGT CCACGTCGAC TTCGACCGGT ATCAACTCGT TGTCGACTGG CCTCAGCGCG
ACCGACAGCT CGGTTGCTTC GCTGTCGACT TCCACGTCGA CGGGCCTCTC GTCGGCCACA
AGCTCGATCG GCTCGCTGTC CACCTCGACG TCGACGGGCA TCAACTCGCT GTCGACTGGC
CTGAGCTCGA CTGACAGCAC AGTAACGTCG CTCTCGACCT CCACGTCGAC GGGCCTGTCG
TCGGCCACAA GCTCGATCGG CTCGCTGTCC ACGTCGACCT CGACGGGTAT CAACTCGCTG
TCCACGGGCC TCAGCTCCAC CGACAGCTCG CTCACGTCGC TCTCGACCTC CACGTCGACC
GGGCTGTCGT CGGCAACCAG CTCGATCGGC TCGCTGTCCA CGTCGACTTC TACCGGCATC
AACTCGTTGT CGACGGGCCT CAGCTCGACC GATAGCTCGC TCACGTCGCT CTCGACTTCA
ACGTCGACGG GTCTCTCGTC GGCGACCAGC TCGATCAGCT CACTGTCCAC CTCGACCTCG
ACTGGCCTCT CGTCGGCCAC CAGCTCGATC GGCTCACTGT CCACCGGCCT CAGCTCGACC
AACAGTTCGC TGACGTCGTT GTCCACGTCG ACCTCCACCG GCATCAACTC CTTGTCGACG
GGCCTGAGCT CCACGAACAG CTCTGTCGCA TCGCTGTCGA CCTCGACGTC GACCGGCCTC
TCGTCGGCGA CAAGCTCGAT CAGCTCGCTG TCCACCTCGA CGTCGACCGG CCTCTCATCC
GCAACCAGCG CGATCGGTTC GCTGTCCACC GGCCTGAGCT CGACCGACAG CACGGTAACG
TCGCTGTCCA CCTCCACGTC GACGGGTCTG TCGACGGCCA CCAGCTCGAT CACGTCGCTG
TCCACCTCGA CGTCGACCGC GATCGACGCC GCGAAAACGC ACTACTACAG CGTCAACGAC
AACGGCACGC AGCAAGCCAA CTACGCCAAC GACGGCGCAA CGGGCATCAA CTCGCTCGCA
GCCGGCGTGA ACGCGAGCGC CGCAGGCGCC AGCAGCGTCG CGGTCGGCGA CGGCTCGAAC
GCGCAGACGG CGGGTGCAGT CGCGATCGGC CAGAACGCGT CGGCCACCGG CGGCAAGGCG
GTGTCGATCG GCTCCGGCAA CACCGCGAGC GGCGACGGCG CGGTCGCGAT CGGCGACCCG
AGCGTCGCAA CGGGCACCGG CGCAGTGGCG ATGGGCGCGA ACGACACGGC GACCGGCGAC
GGCGCAGTGG CGCTCGGCAA CGCGAACACC GCAACCGGCA ACAGCGCGCT CGCCCTCGGC
AGCTCGAGCC AGGCCACCGC GGACAACACG ATCGCGCTCG GCAACAAGGC AGTCGCCAGC
GCCATCGGCG CCCAGGCCTA CGGCTCGGCT GCATCGGCCA CCGCGGCGGA TGCGCTCGCC
TTCGGCACGA ACGCCACGGC GAACGTCGCG AACTCGATCG CCCTCGGTGC GAACTCGGTC
ACGAGCGCGG CAGTCGGCAC CTCGAGCGCC ACGATCGGCG GCGTCTCGTA CCTGTTCGCG
GGCAGCTCGC CGGTGGGCGT GGTGAGCGTC GGCCAGCCGG GGCAGGAACG CCAGATCACG
AACGTCGCGG CAGGCCGGAT CTCGCCCACC AGCACGGACG CGATCAACGG CAGCCAGCTC
AACGCGACGA ACCAGGCAGT CAGCAGCCTG TCCACGTCGA CCGCGTCGAA CATCTCGTCG
CTGTCGACCG GCATCGGTTC GCTGTCCACG GGCCTCAGCT CGACCAACAG CTCGGTGACG
TCGCTGTCCA CGTCGACGTC GACGGCGATC AGCTCGCTGT CGACGGGCCT CAGCTCGACG
AACAGCAATC TGACGTCGCT GTCCACGTCG ACCTCGACCG GCATCGGCTC GCTGTCGACC
GGCCTGAGCA CGACGAACAG CACGGTGGCG TCGCTGTCGA CGGGCGTGAC GAACCTGGGC
GATCAGGTAT CCCAACTGTC GACGACGATC AACAACAACA CGACGCGCTC GTTGAGCAAC
AACGGTGTCG CGGTCGACAT GAACGGCACA GGCAACGATC GGCCGACCGT CACCGCCGGC
ACGAACTCGG TGGCGATCGG CGCGAATTCG AATGACGGCG GTCGTTCGAA CGTGGTGTCG
GTCGGCAGCG ACACGCAGCA GCGCCAGATC ACGAACGTCG CGCCGGGCAC GCAAGGCACC
GATGCGGTGA ACGTGAACCA GCTGACGCAG GTGCAGACGA CGCTGTCGAC GGCACTGTCG
GGCCAGCAGA CGCAGATCAA CTCGCTGGGT TCGCAACTGC AGCAGACCGA CCAGATGGCG
AAGCAGGGTA TCGCGGCCGT CGGCGCGATG GCGTCGATCC CGCAGCTCGA TCGCGACGCC
AACTTCGGGA TGGGTGTGGG CACATCGACC TTCCTCGGCC AGAAAGCGAT GGCGGTCAAC
ATGCAGGCGC GGATCACCGA GAACCTGAAG GCGTCGATCA ACGGCGGCTT CAGCGGCGGT
CAGAAGGTGA TCGGCGCGGG CATGCTGTAT CAGTGGAAGT AA
|
|---|
| Protein sequence | MNRTYRSIWN EALGAWVAAS EHDSARGKPN KSAVVVAAVA ALTIGLPGFA EANTLNTQQT
CFTGSNSAVG RVNPGGTQNQ AGDGSGTYSV VAGCNSNGNG WTGVTVYGSF AQATGNGAVA
TGMQSSAGLW GVAAGLETTA SGTGATALGF GSTASALNSV AIGGAGGNGT TPLSQANSTL
ASGAGAIAIG SNATKGAQSA ASDGIAIGGQ SSVASTATSG IAIGRGATVN GAYGIAQGDG
VISGATGQNV AIGSSGTTAN SATATGGAVA IGRGQVASGD GAVAIGDPNS ATGTGALAIG
ANNTSSGSGA LALGNGNSAS GTGAVALGNS STATNSSVAI GNAATSNVAN SVALGGGSVT
TSAASATTGG TTTVSNTTIG GQTFGNYAGA GSAGGVVSVG QPNAERRIQN VAAGLVSATS
TDAINGSQLF AVASTTTSSI TSLSTSASTG LSSANSSISS LSTSTSTGIN SLSTGLSSTN
SSVTSLSSST STGLSSANSS IGSLSTSTST GINSLSTGLS STNSSVTSLS SSASTGLSSA
NSSIGSLSTS TSTGINSLST GLSSTNSSVT SLSSSTSTGL SSANSSIGSL STSTSTGINS
LSTGLSSTNS SVTSLSSSTS TGLSSANSSI GSLSTGLSST NSSVTSLSSS TSTGLSSANS
SIGSLSTSTS TGINSLSTGL SSTNSSVTSL SSSTSSGLSS ANSSIGSLST GLSSTNSSVT
SLSSSTSTGL SSANSSISSL STSTSTVLSS TNSSVTSLSS STSTGLSSAN SSIGSLSTST
STGLSSTNSS VASLSTSTST GINSLSTGLS STNSSVTSLS SSTSTGLSSA NSSIGSLSTS
TSTGLSATNS SVASLSTSTS TGINSLSTGL SSTNSSVTSL SSSTSTGLSS ANSSISSLST
STSTGLSSTN SSVASLSTST STGINSLSTG LSSTNSSVVS LSTSTSTGLS SANSSIGSLS
TGLSTVTTKT DNLGNSTAAA LGGGASYNPA TGSVSAPSYT TYNANGTTST ANSVGSAIDS
INNQGIKYFH ANSTGTDSQA LGTDSVAIGP HAIANHTGDV ALGSGSVTGT PNATPTGTVG
GVTSTFAGGN PTSVVSVGDA STGTTRQITN VAAGQITATS TDAINGSQLF ATNSAVDSLS
TTVSSSSNAI ASLSTGITSL STGLSSTNSS VTSLSSSAST GLSSANSSIT SLSTSTSTGI
NSLSTGLSST NSSVTSLSTS TSTGLSSANS SITSLSTSTS TGINSLSTGL SSTDSSVASL
STSTSTGLSS ANSSISSLST STSTGINSLS TGLSSTNSSV TSLSTSTSTG LSSANSSITS
LSTSTSTGIN SLSTGLSSTD SSVASLSTST STGLSSATSS IGSLSTSTST GINSLSTGLS
STDSSVASLS TSTSTGISSA TSSIGSLSTS TSTGINSLST GLSSTNSSVA SLSTSTSTGL
SSATSSIGSL STGLSSTDSS VASLSTSTST GLSSATSSIS SLSTGLSSTD SSVASLSTST
STGLSSATSS IGSLSTSTST GINSLSTGLS STDSSVASLS TSTSTGLSSA TSSIGSLSTS
TSTGINSLST GLSATDSSVA SLSTSTSTGL SSATSSIGSL STSTSTGINS LSTGLSSTDS
SVASLSTSTS TGLSSATSSI GSLSTSTSTG INSLSTGLSA TDSSVASLST STSTGLSSAT
SSIGSLSTST STGINSLSTG LSSTDSTVTS LSTSTSTGLS SATSSIGSLS TSTSTGINSL
STGLSSTDSS LTSLSTSTST GLSSATSSIG SLSTSTSTGI NSLSTGLSST DSSLTSLSTS
TSTGLSSATS SISSLSTSTS TGLSSATSSI GSLSTGLSST NSSLTSLSTS TSTGINSLST
GLSSTNSSVA SLSTSTSTGL SSATSSISSL STSTSTGLSS ATSAIGSLST GLSSTDSTVT
SLSTSTSTGL STATSSITSL STSTSTAIDA AKTHYYSVND NGTQQANYAN DGATGINSLA
AGVNASAAGA SSVAVGDGSN AQTAGAVAIG QNASATGGKA VSIGSGNTAS GDGAVAIGDP
SVATGTGAVA MGANDTATGD GAVALGNANT ATGNSALALG SSSQATADNT IALGNKAVAS
AIGAQAYGSA ASATAADALA FGTNATANVA NSIALGANSV TSAAVGTSSA TIGGVSYLFA
GSSPVGVVSV GQPGQERQIT NVAAGRISPT STDAINGSQL NATNQAVSSL STSTASNISS
LSTGIGSLST GLSSTNSSVT SLSTSTSTAI SSLSTGLSST NSNLTSLSTS TSTGIGSLST
GLSTTNSTVA SLSTGVTNLG DQVSQLSTTI NNNTTRSLSN NGVAVDMNGT GNDRPTVTAG
TNSVAIGANS NDGGRSNVVS VGSDTQQRQI TNVAPGTQGT DAVNVNQLTQ VQTTLSTALS
GQQTQINSLG SQLQQTDQMA KQGIAAVGAM ASIPQLDRDA NFGMGVGTST FLGQKAMAVN
MQARITENLK ASINGGFSGG QKVIGAGMLY QWK
|
|---|
| |