Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_4024 |
Symbol | |
ID | 4312919 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 941499 |
End bp | 944099 |
Gene Length | 2601 bp |
Protein Length | 866 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638151865 |
Product | fimbrial biogenesis outer membrane usher protein |
Protein accession | YP_775911 |
Protein GI | 115358773 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.469528 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCCGA CCCGACTGCC TCGCCGCGGC GCGGCCGACA TGCCGCACGT CAAGCCGATC CATCTACTGG TGGCGGCCTG CGTCGCCGCG TGGTCCGCCC ATGGCCGCGC GACGACGCAG GCAGCCGCCG AAAGCACGCT CGCGCACGTC GAGTTCGACG GCGCGTTCCT GCAGAGCCGC CTGGGCAAGC ATGTCGATGT GTCGCGCTTC GCGCAGCGCA ACGTGACGGC GCCCGGCGTG TACACCACCG ACATCCATGT CGGTCCCGAC TGGATCGGCC GCTACGACGT GCGCTTCGTG GCCGCGCCGG ATTCGGGCGA CGCGCGGCCG TGCTTCGACC GCACGCAGCT CGAGCGCGTT GGCGTCGATT TCGGCAAGCT CGCTCCGGAG GTGCTCGCGC GACTGGACAG CGACGGCGCC TGCCTGCAAC TCGAGCAGGT CGTGCCGGGC GCCAGCGCGG CATTCGACTT CGCGCGACAG ACACTGCGGC TGTCGATCCC GCAGGCGTCG CTCGTACGCA AGGCGCGCGG CTACGTGAGC CCCGATCAAT GGACCTCCGG CGAAACCGTC GGCCTGCTCG GCTACAACTT CAATCTTTAT ACGTCGAAGG CCAGCGGCCA CACCACGCAG ACGCAAGGCT ATCTCGGCCT GAACGGCGGC GTGAACCTCG GCAACTGGCG CTTTCGCCAC GAAGGCTCCT ATTCATGGTC GTCGCGCGGT GAGAGCCGGT ATCAGGACAT CGCGACCTAT CTCCAGCGCG ACTTGCCGTC GCTGTCGTCG CAGCTCGTCG TCGGCGAAAG CTATACGTCG GGCGAACTGT TCGACTCGAC GCAGTTCCGC GGCGTGCGCC TGTCGACCGA TGACCGCATG CTGCCCGACT CGCTGCGCGG CTATGCGCCC GTGGTGCGCG GCATCGCGAA CAGCAACGCG AAGGTGACGA TCCGCCAGAA CGACGTGACG ATCTACGAGA CGACGGTCGC ACCCGGCAAT TTCGAAATCG ACGACCTCTA TCCGACCGGG TACGGCGGCG ACCTGCAGGT ATCGGTTGCC GAAGCCGACG GCTCCGTGCA CTCGTTCTCG GTACCCTACG CCGCCGTGCC GATGTCGCTG CGGCCGGGCA TCGGCCGCTA CAGCTTCGTC GCGGGCACGC TGCGCAATCC CCACGGATCG AGCCAGCCGC TGTTCACGCA GGCGACCTAC CAGCGCGGCC TGACCAACCT GCTGACGGCC TACGGCGGCG TCACGCTCGC GGGCGGTTAC GCGTCGGCGA TGCTGGGCGG CGCGTTCAAC ACGTCGTTCG GCGCGTTCGG CGCGGACGTC ACGCATGCGC TGACCTCGAT CCCGGGCGCG AAGCGCTACA GCGGTTCGAG CGTGCGCGTC AGCTATGCGA AGTCGGTCGA TGCGACCGGC ACCGATATCG CACTCGCCGC GTATCGCTAT TCGACGGACG GCTATTTCGG CCTCAACGAC GCGATGCAGG CACGCGATGC CGCGCGCGAC GGCCGCTCGG CGCAGTCGGT CTGGCGCCAG CGCAATCGCG CGTCGCTGGC GCTCACCCAG CGGCTGGGCA CGACCGGCGG CCGCATCAAT ACGACGGCAT CGGCCGTCAA CTACTGGAAC CGCCCCGGCT CGGACGTCAA TTACTCGGTC GGCTACACGA ACCAGTTTCG CAATATTTCC TACAGCCTGA CGGCCACGCG GCAGCGCAAT GCCGGCGGCG ACATGGGCAC GCTCTATTAC GCCAGCGTCA CGATCCCGTT GGGCCGCGAG CGCCCGATGA CCGTGTCGGG CAACGTGTCG CGCGACACGC TCGGCCGCAC CCGGTTGCAA TCGACGCTGT CCGGATCGCT CGGCGAGGAC CACGCGCTGT CGTACAGCGT CAGCGCGAAC CACGCGTCCG GCCCGAACTC GGGCACGGAC GGCAGCGCCA ACGTCACGTA CCGCACGCGC GTCGCGGAAG TCAATGCCAG CGCCGGCGCG AGCACGGACT TCCAGCAGGG CTCGCTCGCT GTGCGCGGCG CGCTGGTCGC ACACCGCGGC GGCATCACGT TCTCGCAGCC GGTATCCGAG ACGTTCGCGA TCGTCGAAGC GCCCGGCGCG GCCGGCGCGC GCGTCACGAA CGCGGCGGGC GTCAAGGTCG ACGGCAACGG CTACGCGGTC GTGCCGTATC TCACGCCATA CAGCCTCAAT ACGGTCGCAC TCGATCCGAA GGGCATCCCG ATGGATGTCG AGCTGAAGGA AACCAGCCGG CAGATCGCGC CGCGCGCCGG CGCGGTGCCG CTCATCCGGT TTGCGACCGA CACCGGCCGC GCGGCGCTCG TTCAGGCGCG CCAGGCCGAC GGCACGCCGT TGCCGTTCGG CGCCGCGGTG CACGACGAGA CCGGCAAGGA AGTCGGCGTC GTCGGCCAGG CGAGCAGGAT CTTCGCGCGC GGGCTCACCG ACAGCGGTTC GCTGACGGTC CAATGGGGCG CCGACGACCG TCGCTCGATC TGTCGAATCG CATACGAGCT GCCTGTCGCG GAACATCGCC GGCCATCGTC GGGCATTCGG ATCGTCAAGA GCATCTGCGA GCCCGACACC ACGGCCGCCG GCATTCAATA A
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Protein sequence | MTPTRLPRRG AADMPHVKPI HLLVAACVAA WSAHGRATTQ AAAESTLAHV EFDGAFLQSR LGKHVDVSRF AQRNVTAPGV YTTDIHVGPD WIGRYDVRFV AAPDSGDARP CFDRTQLERV GVDFGKLAPE VLARLDSDGA CLQLEQVVPG ASAAFDFARQ TLRLSIPQAS LVRKARGYVS PDQWTSGETV GLLGYNFNLY TSKASGHTTQ TQGYLGLNGG VNLGNWRFRH EGSYSWSSRG ESRYQDIATY LQRDLPSLSS QLVVGESYTS GELFDSTQFR GVRLSTDDRM LPDSLRGYAP VVRGIANSNA KVTIRQNDVT IYETTVAPGN FEIDDLYPTG YGGDLQVSVA EADGSVHSFS VPYAAVPMSL RPGIGRYSFV AGTLRNPHGS SQPLFTQATY QRGLTNLLTA YGGVTLAGGY ASAMLGGAFN TSFGAFGADV THALTSIPGA KRYSGSSVRV SYAKSVDATG TDIALAAYRY STDGYFGLND AMQARDAARD GRSAQSVWRQ RNRASLALTQ RLGTTGGRIN TTASAVNYWN RPGSDVNYSV GYTNQFRNIS YSLTATRQRN AGGDMGTLYY ASVTIPLGRE RPMTVSGNVS RDTLGRTRLQ STLSGSLGED HALSYSVSAN HASGPNSGTD GSANVTYRTR VAEVNASAGA STDFQQGSLA VRGALVAHRG GITFSQPVSE TFAIVEAPGA AGARVTNAAG VKVDGNGYAV VPYLTPYSLN TVALDPKGIP MDVELKETSR QIAPRAGAVP LIRFATDTGR AALVQARQAD GTPLPFGAAV HDETGKEVGV VGQASRIFAR GLTDSGSLTV QWGADDRRSI CRIAYELPVA EHRRPSSGIR IVKSICEPDT TAAGIQ
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