Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_4017 |
Symbol | |
ID | 4312912 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 934107 |
End bp | 935708 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638151858 |
Product | extracellular solute-binding protein |
Protein accession | YP_775904 |
Protein GI | 115358766 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0465332 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTCC CGACCTCCCG GCTCGTCGCG GCACTGGCCG CCGCGTCCGT TCTCGCCACC GTTCCGCTTC GCGCCGCGCA CGCGGAAACG CCGAAGGACA TGTTCGTGAT GGCCACGCTG CTCGACGAAT TCACGACGCT CGATCCCGGC GAGATCTACG AGCTGGTGCC GGAGGAATAC GTCGCGAATA CCTACGACCG GCTCGTGCGC GTCGACCTGC GCGATCCGTC GAAATTCAAC GGCGATGTCG CGCAGTCGTG GACGGTGAGC GCCGACGGGC TGACCTATAC GTTCAAGCTG CGCTCGGGGC TCAAGTTCCA TTCGGGCAAC CCGCTGACGG CCGACGACGT CGCGTGGTCG ATCCAGCGCG CGGTGCTGCT CGACAAGGGC CCGGCCGCCG TGCTGACGGG CATCGGCCTC ACGAAGGCGA ACGTCGCGGC GAACGTGAAG AAGCTCGACG ACCAGACGGT GTCGATCACG ACCGACCACA AATACGCGCC GACCTTCGTG CTGAACGTGC TCGGCTCGTG GCCCGCGTCG GTGGTCGACA AGAAGCTGCT GCTGTCGCAC CAGCAGGGCA ACGACTTCGG CAACGCCTGG CTGAAGACCA ACGAGGCCGG CTCCGGCGCC TACAAGCTGG TCAAGTGGAG CGCCGGCGAC AGCATCGTGC TGCAGCGCTT CGACGGCTAC CGGCTGCCGC TCGCGATGAA GCGCATCGTG CTGCGCCATG TGCCTGAAGC GGCGAGCCAG CGCCTGCTGC TGGAAAACGG TGATGTGGAC GCGGCACGCG ACCTGAGCCC GGACGATCTC GCGGCGGTCG TGAAATCCGG CAAGGCGAAG GTCGCGGCAT CGCCGCAGGC GACGCTGCTG TATCTCGGCC TGAACACGAA GAACCCGACG CTCGCGAAGC CCGACGTGCA GGAAGCGCTG AAGTGGCTGG TCGACTATTC CGGTATCCAG GCCAACGTCG TGAAGACGAC CTACAAGGTG CATCAGACCT TCCTGCCCGA AGGCTTCCTC GGCACGCTGA AGGCGAACCC GTACAAGCTC GACGTCGCGA AGGCGAAGGC GCTGCTCGCG AAGGCCGGCG TGCCGAACGG CTTCTCGGTG ACGATGGATG TGCGCAACGA CTATCCGTAC ACGGAGATCG CGCAGGCCGT GCAGGCGAAT TTCGCGCAGG CGGGCGTCAA GGTGCAGCTG ATCCCCGGCG ACAACAAGCA GACGCTCGCG AAATACCGCG CGCGCCAGCA CGACATCTAC ATCGGCGAAT GGTCGGCCGA CTACATCGAT CCGCACAGCA ACGCGCAGGG TTTTGCATGG AACCCCGACA ACTCCGACAA GTCGAGCTAT AAAATGCTCG CCTGGCGCAA CAGCTGGGAC ATTCCGCAAT TCACGAAGGA GACCGACGCC GCCCTCGCCG AGCCGACCGC CGCGCAACGC GCGCAACGGT ATCAGGCGAT GCAGAAGGAG ATGCTCGCGC GCTCGCCGTT CGTGATCATG TTCGAGAAAG TCGCGCAGGT CGCGACGCGG CCCGGCGTGA GCGGGCTCGA AGTCGGACCG ATCAACGATC TCGTGTCGTA CCGTAACCTG AAGAAGCCTT AA
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Protein sequence | MKLPTSRLVA ALAAASVLAT VPLRAAHAET PKDMFVMATL LDEFTTLDPG EIYELVPEEY VANTYDRLVR VDLRDPSKFN GDVAQSWTVS ADGLTYTFKL RSGLKFHSGN PLTADDVAWS IQRAVLLDKG PAAVLTGIGL TKANVAANVK KLDDQTVSIT TDHKYAPTFV LNVLGSWPAS VVDKKLLLSH QQGNDFGNAW LKTNEAGSGA YKLVKWSAGD SIVLQRFDGY RLPLAMKRIV LRHVPEAASQ RLLLENGDVD AARDLSPDDL AAVVKSGKAK VAASPQATLL YLGLNTKNPT LAKPDVQEAL KWLVDYSGIQ ANVVKTTYKV HQTFLPEGFL GTLKANPYKL DVAKAKALLA KAGVPNGFSV TMDVRNDYPY TEIAQAVQAN FAQAGVKVQL IPGDNKQTLA KYRARQHDIY IGEWSADYID PHSNAQGFAW NPDNSDKSSY KMLAWRNSWD IPQFTKETDA ALAEPTAAQR AQRYQAMQKE MLARSPFVIM FEKVAQVATR PGVSGLEVGP INDLVSYRNL KKP
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