| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3978 |
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| Symbol | |
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| ID | 4312874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 880364 |
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| End bp | 881983 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638151820 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_775866 |
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| Protein GI | 115358728 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.500166 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0737697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGATA CCGATACGCA AAAGGCCGAC GTCGTGGTCG TCGGGTCCGG TGTCGCGGGC
GCGATCGTCG CGCACCAGCT CGCGATGGCG GGCAAGTCGG TGATCCTGCT CGAAGCAGGC
CCGCGCATGC CGCGCGGCGA AATCGTCGAG CGTTTCCGCA ACCAGCCCGA CAAGACGGAC
TTCATGGCGC CGTACCCGTC GAGCCCGTGG GCGCCGCATC CGGAATACGG CCCGCCGAAC
GACTACCTGG TCCTGAAGGG CGAGCACAAG TTCAACTCGC AGTACATCCG TGCGGTGGGC
GGCACGACGT GGCACTGGGC CGCGTCGGCG TGGCGCTTCA TCCCGAACGA CTTCAAGATG
AAGACGGTGT ACGGCGTCGG CCGCGACTGG CCGATCCAGT ACGACGATCT CGAGCATTAC
TATCAGCGCG CCGAGGAAGA GCTCGGCGTG TGGGGCCCCG GCCCCGAGGA AGACCTGTAC
TCGCCGCGCA AGCAGGCGTA CCCGATGCCG CCGCTGCCGT TGTCGTTCAA CGAGCAGACG
ATCAAGAGCG CGCTCAACGG CTATGACCCG AAGTTCCACG TCGTGACCGA GCCGGTCGCG
CGCAACAGCC GCCCGTACGA CGGCCGGCCG ACTTGTTGCG GGAACAACAA TTGCATGCCG
ATCTGCCCGA TCGGCGCGAT GTACAACGGC ATCGTGCACG TCGAGAAGGC CGAGCAGGCG
GGCGCGAAGC TGATCGACAG CGCGGTCGTC TACAAGCTCG AGACCGGTCC GGACAAGCGC
ATCGTCGCCG CGATCTACAA GGACAAGACG GGCGCCGACC ATCGCGTCGA AGGCAAGTAC
TTCGTGGTGG CCGCGAACGG CATCGAGACG CCGAAGATCC TGCTGATGTC GGCGAACCGC
GATTTCCCGA ACGGTGTCGC GAACAGCTCC GACATGGTCG GGCGCAACCT GATGGACCAC
CCGGGCACGG GCGTGTCGTT CTACGCGAGC GACAAGCTGT GGCCGGGCCG CGGCCCGCAG
GAGATGACGT CGCTGATCGG ATTCCGCGAC GGCCCGTTCC GCGCGACCGA AGCCGCGAAG
AAGATCCACC TGTCGAACAT GTCGCGCATC AACCAGGAGA CGCAGAAGAT CTTCAAGGCC
GGCAAGCTGA TGAAGTCCGA CGAGCTCGAC GCGCAGATCC GCGATCGTTC CGCGCGCTAC
GTGCAGTTCG ACTGCTTCCA CGAAATCCTG CCGCAGCCCG AGAACCGCAT CGTGCCGAGC
AAGACGGCCA CCGACGCGAT CGGCATTCCG CGCCCGGAAA TCACGTATGC GATCGACGAC
TACGTGAAGC GCGGCGCCGT GCATACGCGC GAGGTCTACG CGACGGCCGC GAAGGTGCTG
GGCGGTACGG ACGTCGTGTT CAACGACGAG TTCGCGCCGA ACAACCACAT CACGGGCTCG
ACGATCATGG GCGCCGATGC ACGTGACTCG GTCGTCGACA AGGACTGCCG CACGTTCGAC
CATCCGAACC TGTTCATCTC GAGCAGCTCG ACGATGCCGA CCGTCGGTAC GGTGAACGTG
ACGCTGACGA TCGCGGCGCT GGCGCTGCGG ATGTCGGACA CGCTGAAGAA GGAAGTCTGA
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| Protein sequence | MADTDTQKAD VVVVGSGVAG AIVAHQLAMA GKSVILLEAG PRMPRGEIVE RFRNQPDKTD
FMAPYPSSPW APHPEYGPPN DYLVLKGEHK FNSQYIRAVG GTTWHWAASA WRFIPNDFKM
KTVYGVGRDW PIQYDDLEHY YQRAEEELGV WGPGPEEDLY SPRKQAYPMP PLPLSFNEQT
IKSALNGYDP KFHVVTEPVA RNSRPYDGRP TCCGNNNCMP ICPIGAMYNG IVHVEKAEQA
GAKLIDSAVV YKLETGPDKR IVAAIYKDKT GADHRVEGKY FVVAANGIET PKILLMSANR
DFPNGVANSS DMVGRNLMDH PGTGVSFYAS DKLWPGRGPQ EMTSLIGFRD GPFRATEAAK
KIHLSNMSRI NQETQKIFKA GKLMKSDELD AQIRDRSARY VQFDCFHEIL PQPENRIVPS
KTATDAIGIP RPEITYAIDD YVKRGAVHTR EVYATAAKVL GGTDVVFNDE FAPNNHITGS
TIMGADARDS VVDKDCRTFD HPNLFISSSS TMPTVGTVNV TLTIAALALR MSDTLKKEV
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