Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3947 |
Symbol | |
ID | 4312843 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 842010 |
End bp | 843635 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 638151789 |
Product | peptidase S1 and S6, chymotrypsin/Hap |
Protein accession | YP_775835 |
Protein GI | 115358697 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.889809 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTTCGCC AGACGCTTGC TCGCGCCGTG CTTCGCACCG CGTTGATCGG GGGCGTATTC GCCGGCATTT TGTCGTCGTC GCCGCCCACC CGTGCCGGGA CCGTCGCGAC GCCCGCCCCA CCGCCTGTCA TGAAAAGCAG GCCCGCCACA CGCGCTTACT CGATGCCGGT CGACTTTCCG GCGATCGTCG ACCGCTACGG CCCGGCGGTC GTGACCATCA TGACCACCGG CCCCGACCAG CAGCCCGGTG GCCCCGCCTT CGCGATCCTC GAACCCGACG ATCCGCTCAC CGGGTTCTTC CGCCGCGGCG CGCAGCCGCC TGCGCCCCCG CCTCCGCTCA TGCCCGGGCA GGGCCCGCAG GCGCCGTTGC CCGATACGTC GCCGCGCGCG ATCGCGGGCA GCGGCTCGGG CTTCATCGTC AGCCCCGACG GGCTGATCCT GACGTCTGCG CATATCGTCG CCGACGCGAC CGACGTGACG GTGCGACTGG CCGATCGTCG TGACCTGAAG GCGACGGTGC TGGCCGTCGA TCCGCAGAGC GACGTCGCGG TGCTGCGCGT CGACGCGACG AAGCTGCCGT TCGTGCGCAT CGGCGATTCG GCGCGGGTGC GCGCCGGCGA ACCGGTGATG ACGATCGGCG CGCCCGACGG CTCGGGCAAT ACGGTCACGG CCGGCATCGT CAGCGCGACG GCGCATCCGC TGCCGGACGG CAGCGCGTTT CCGTTCTTCC AGACCGACAT CGCGGTGAAT CCCGACAACT CGGGCGGCCC GGTGTTCAAC CGCGCGGGCG AGGTGATCGG CATCGCGGTG CAGGTCTATA CCGGCGCCGA CCGCTACGCG AGCACGACGT TCGCGATCCC GATCGCGTTC GCCATGAAGG TGCGTGCGCA AGCGCAGGCG CAGATGCGGA CCAACGCGCA GGCGCAGCGC ATGTCGTCCG TGTCGTCCGG CAACGCGCTG GGCGTCGACG TACAGGATGT CGGCGCCGGG TTGGCCGCCG CGTTCGGTCT GCCGCGTCCG GTGGGCGCGC TCGTCAACGG CGTCGATCCC GGCTCGCCGG CCGCCGCGGC CGGCGTGAAG CCCGGCGACG TGATCGTGCA GTTCGGCGAC AAGCCGATCG GCCAGGCTGC CGAGCTGAAC GACCTGGCCG CCGCGTTGCC GCCTGGCGGG AAGGTGCCGC TGCGGCTGAT CCGCAACCGC ACGCCGATGC GGCTGACGGT CACGGGAGCG GCGACTGGTG ACGCGATCGA CACCGCGGCT TACAACGCGC CCTACAACGC GCCCGCGACG GGCAGCGCAG GCACGGTAGG CACTGCCGGG GCGGCGGGCG TGGCGATGGC CGCCGCACGG CCGGCCGATG GCGGCGATCG GCTCGGGCTG ACGATGCATC CGCTGAGCGA TGCCGAACGG CGGTCGACCG GGCTCGCGGT CGGGATGATG GTGGATGCGG TGCACGGGCC GGCCGCGCGC GCGGGCATCC GGCCGGGCGA CGTCGTGCTG GAACTCAACG ACACGCTGCT CGAAACGCCG GAAGACGTGC CGGCGCTCGA AGCGAGCGGC GGCGTGATCG CGGTGCTGAT CCAGCGCGAG AACGCGCGCA AGTTCGTGTC CGTGCGGGCG CGGTAG
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Protein sequence | MVRQTLARAV LRTALIGGVF AGILSSSPPT RAGTVATPAP PPVMKSRPAT RAYSMPVDFP AIVDRYGPAV VTIMTTGPDQ QPGGPAFAIL EPDDPLTGFF RRGAQPPAPP PPLMPGQGPQ APLPDTSPRA IAGSGSGFIV SPDGLILTSA HIVADATDVT VRLADRRDLK ATVLAVDPQS DVAVLRVDAT KLPFVRIGDS ARVRAGEPVM TIGAPDGSGN TVTAGIVSAT AHPLPDGSAF PFFQTDIAVN PDNSGGPVFN RAGEVIGIAV QVYTGADRYA STTFAIPIAF AMKVRAQAQA QMRTNAQAQR MSSVSSGNAL GVDVQDVGAG LAAAFGLPRP VGALVNGVDP GSPAAAAGVK PGDVIVQFGD KPIGQAAELN DLAAALPPGG KVPLRLIRNR TPMRLTVTGA ATGDAIDTAA YNAPYNAPAT GSAGTVGTAG AAGVAMAAAR PADGGDRLGL TMHPLSDAER RSTGLAVGMM VDAVHGPAAR AGIRPGDVVL ELNDTLLETP EDVPALEASG GVIAVLIQRE NARKFVSVRA R
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