| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3585 |
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| Symbol | |
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| ID | 4312481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 408253 |
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| End bp | 409707 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638151427 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_775473 |
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| Protein GI | 115358335 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACT GCAGTCGGCA CAGTCGAACG GATGGGGGCA TGTCACGAGA GCCCAACCTC
AAGGTCGGGC GTCCTCGGTA CGCTGCGCGC AATGCGCTAA AGGCAATTTC CAGCTTTCTT
GCGATCATAT CGGCTACGCA TGCCAACGCG TCGAGTCTGG CGAATCTCGC CGGCGAGGCG
CTCGCGCAAG ATGCCACGTT CAGGAGCGCC GAAGCTGCGT GGCGTGCAGG GATCGAAAGA
GCGCCTCAAG GGCGGGCGGG ACTGCTGCCG CAAGTTGGCA TCCAGCAGGT CATCTATCGC
AATGGCGTGC GGATTCCAGG GCAAACCATT CCCGGCTATT CGACCAACGG TTTCACCCTG
ACGCTGAACC AGCCTCTCTT CAACTGGGCC GCGTGGGAAA ACTGGCAGCA AGGCCAACTC
CTGGCGATGG ATGCCGATCT TGCGTTGGCG CAAGCGAAGC AGGACTTGCT CCTTCGCGTT
GCTCAGGCCT ATCTGGCCGC ACTGAATGCA CAGGACGATC TCGCGCTCGC CGTCGGCCAC
CGCAAGGCCG TCGCGGAACA ACTGGCGCTC GCGAAGCGCC GCTTCGCGCT GGGTGATGCG
ACCATCGTGG ATACGAACGA GGCATTGGCC GGTTTTGATG CTGCGCGAGC CGATGAAGTC
GCCGCGCAAA CGCAGCGCGA TACCAGCTAC GCGGCGCTCC AGAAGATTGT CGGTCATCCT
GTCGACAGGG TAGACGGATG GCGTGACGAT GCGCATCTGC CGCCCGTGGC GACCGCAGAC
CTGCAACAGT GGATGGACAC GGCTGCCACT GCGGATTACG GAGTGCGTCG AAAAATGATC
GCGATCCAGC TCGCCAGCCG CGAGCGAAGC AAGGCACGCG CCGGTGACTA TCCCACTGTC
TCGCTGGTCG GCAACGCCAG CAACGGCAAT GCGGCGTTTA TCAATGGACA GACGAACTTC
TACACCGGCG CAAGCCGTGG CAGCTCCGGC TACGTTGGCA TCCAGATCTC GTTGCCTCTG
ACCGACGGCC TGATGACCCG CAGCAAAATT CGCGAAGCGC TCGCGCTGGA GGACAAGGCT
CGCGAAGATC TGGAAGACGC CCAGCGCAGC GCCCGGCTCA CGGCCCACGA CGCGTATTTG
GGCGTCACGC GAGGACTGGC GCAGACCGAT GCGCTGGCGA GCGCGGTGCG GTCCGCCACG
ATCGCGTTGC GGTCGAATCA GACCGGCTAC CGGGTCGGCG TTCGTGTGAA CGCTGATGTG
CTTGACGCAG GCGATAAGCT CTACCGGGCC CAGCGCGATT TCGCGCGCGC CCGTACGGAA
ACGCTCGCCC AAGCGCTGAA GCTGAAAGCG AGCACCGCCG ACCTGGGCGA AGCCGACCTT
GCGGCACTCG ATACGATGAT GGTCGAGCAC ACGCCCGCCC GCATCCCGAG CTCCGGCGCA
TCGGGAGGAC ACTGA
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| Protein sequence | MSNCSRHSRT DGGMSREPNL KVGRPRYAAR NALKAISSFL AIISATHANA SSLANLAGEA
LAQDATFRSA EAAWRAGIER APQGRAGLLP QVGIQQVIYR NGVRIPGQTI PGYSTNGFTL
TLNQPLFNWA AWENWQQGQL LAMDADLALA QAKQDLLLRV AQAYLAALNA QDDLALAVGH
RKAVAEQLAL AKRRFALGDA TIVDTNEALA GFDAARADEV AAQTQRDTSY AALQKIVGHP
VDRVDGWRDD AHLPPVATAD LQQWMDTAAT ADYGVRRKMI AIQLASRERS KARAGDYPTV
SLVGNASNGN AAFINGQTNF YTGASRGSSG YVGIQISLPL TDGLMTRSKI REALALEDKA
REDLEDAQRS ARLTAHDAYL GVTRGLAQTD ALASAVRSAT IALRSNQTGY RVGVRVNADV
LDAGDKLYRA QRDFARARTE TLAQALKLKA STADLGEADL AALDTMMVEH TPARIPSSGA
SGGH
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