Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3531 |
Symbol | |
ID | 4312427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 350096 |
End bp | 350848 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638151373 |
Product | short chain dehydrogenase |
Protein accession | YP_775419 |
Protein GI | 115358281 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCGCT TGCAAGGGAA ACGTACTCTC ATCACTGGAG GCACCAGTGG CATCGGTCTG GAAACCGCAA AGCAGTTTCT GAATGAAGGC GCCCGCGTCG TCGTTACTGG CGTCAATCCT GATTCGATCG CGAAAGCTAA AGCCGAACTT GGATCCGAGG TCTTGGTTTT ACGCGCCGAC TCGGCCAGCG TCGCCGCGCA AAGGGAACTG GCACAAGCCG TCAAGGACCA CTACGGCCAA CTTGACATCG CCTTCCTCAA TGCCGGCGTA TCCGTCTGGT TGCCGTTCGA GGAGTGGACC GAAGAGATGT TCGATCGGTC GTTCGATGTC AACGTCAAGG GGCCATACTT CCTGTTCCAG GCATTGCTTC CAGTGTTCGC TAGCCCTGCG TCCGTAGTGC TCAACACGTC CGTCAGTGCG CACGTCGGTG CGGAGCGCTC TTCCGTTTAT GCCGCCACCA AGGCAGCGTT TCTGAACATG TCCAAGACGC TTTCGACCGA ACTGCTTGGA CGCGGGATTC GCGTCAACGC AGTCAGTCCC GGCCCGATCG ACACTCCGCT GTACGACAAG CTCGGCATCC CCGACGCGTA CCGCGAGCAA GCCAACAAGG ACATTGCCGC CACCATCCCG CTCGGCCGCT TCGGTACACC GGAGGAGGTG GCCAAGGCTG TGCTGTATCT AGCCTCCGAC GAGTCCAGTT GGACGGTCGG ATCGGAAATC GTCGTGGATG GCGGCCGCAT GCTCAACCGC TGA
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Protein sequence | MSRLQGKRTL ITGGTSGIGL ETAKQFLNEG ARVVVTGVNP DSIAKAKAEL GSEVLVLRAD SASVAAQREL AQAVKDHYGQ LDIAFLNAGV SVWLPFEEWT EEMFDRSFDV NVKGPYFLFQ ALLPVFASPA SVVLNTSVSA HVGAERSSVY AATKAAFLNM SKTLSTELLG RGIRVNAVSP GPIDTPLYDK LGIPDAYREQ ANKDIAATIP LGRFGTPEEV AKAVLYLASD ESSWTVGSEI VVDGGRMLNR
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