| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3448 |
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| Symbol | |
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| ID | 4312183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 243731 |
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| End bp | 245980 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638151290 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_775336 |
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| Protein GI | 115358198 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.771777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.137959 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATACCG AACCGCAAAG TTCTCGATAC AGTCTCGGCC TCGCGGCGGA AGTCCTCGCG
TCCGAGCAAA GCGTGCTGAG GCTGATCACG CGCAACACAC CGCTGCCGGA ACTGCTCGTC
GAGGTCTGCC GGCGCGCCGA GGCGCTGCTC GGCGAAGGCG CGTCGTGCAC GATCCTGCTG
CTCGACGCGG ACGGCGTGCA TGTGCACGTC GGCGCCGCGC CGTCGCTGCC GGCCCAGTAC
AGCGCCGCGA TCGAAGGCGC AACCATTGGG CCCGCCGCGG GCTCGTGCGG CACCGCGATG
TACGAGCGCC GGATGATCGC CGTCGAAGAC ATCGAAACCG ATCCGTTGTG GGCCGACTAT
CGGGCGTTCG CGCTGCCGCT CGGCCTGCGC GCGTGCTGGT CGGTGCCGTT CCTGGACGAG
ACGGGCACCG TGCTCGGCGC GTTCGCCGTC TATCACCGCG CGCCGCGGCG GCCGAGCGAC
ACGGAAACCG ACCTGCTGCG CGATATCGGC AACAGCGTCG GTCTCGCGGT GCACCAGGAC
TCGATCGCTC GTCAGCTCGT GCACAGCGAG GAGCAACACC GTCTCGTCGT CAACAGCCTG
AACGAAGGGA TTCTCATGTT GTCGCCCGAC GGCGTGGTGA TCGCGAGCAA TCCGAGCGCG
AACCGGATGA TGCGCGTGAA GGGCGAGCTC GTCGGGCGCC GGCTGTCGAG CGTGATCCTG
TACAAGCTGC GCGAGGACGG CACGCCGATC GCGCCCGACG ATTGGCCGAG CCGGCTCGCG
TTCACCACGG CCACGCCGCT GCTCGACTAT TCGGTCGGCT TCGGGCTCGC GGACGGCGAC
ATCATCTGGG TGCGCGGCAA CGCGGTGCCG ATCGTGAAGC CGGGCGAGAC GCGGCCCGAG
TCGGTGCTCG TGTCGTTTCA CGACATCGGC CCCGTGCGCG AAGCGCAGCA GCAACTGCGC
TACCTGGCGA CGCGCGACGC GCTCACGGGC CTCTACAACC GGCGCTGGCT CTCCGAGCGG
ATGCGCGAGC TGTTCGGCAC GCACGATGCG GCGGCCGGGC CCGCGCGCGT CGCGATCCTG
TTCATCGATC TCGTCGGGTT CAAGAAGGTC AACGACACGG CCGGCCACGA CGCCGGCGAC
GCGCTGCTGC GCAGCGTCGC GGCGCGCCTC GCGGCCTGCG CGGGCGGGCG CCACGCGCTC
ACGCGCGTCG GCGGCGACGA GTTCGTGATC CTCGTCGACC AATGCGACGA TCCCGACGAA
CTGTCCGCGC TCGCGCGCGA GGTGATCGAC ACGATCGCGA AGCCGTTCGC GATCGCGAAC
AACGAGTACT GGCTCGGCGT GTCGATCGGG ATCAGCGTCG CGCCGCGCGA CGGCGACGAT
GCGGTCACGC TGATGCGCAA CGCCGATTCC GCGATGTACG ACGCGAAGCA GCGCGGCCGC
AATCATTTCA CGTTCTTCAC CGCGCAACTG AATCTGCGCC TGCAGCGCCG CTTCGCGATC
GAGCAGTCGC TGCGCCGCGC GATTTTGTCG GACGCGCTGC GGCTCGCCTA CCAGCCGGTC
GTCGACGCGC GCAGCGGCCG CACCGTCGGC GCCGAAGCGC TGCTGCGCTG GACGAGCCCC
GAGCTCGGGC CGATGTCGCC GACGGAATTC ATCCCGGTCG CGGAAGATAC GGGGCTGATC
GTGGCGATCG GCCAGTGGGT GCTCGAAACG GCCTGCCGGC AGGCCGCCGA ATGGCGGCGC
ACGATCGCGC CCGACCTGAT GCTGGCGGTC AACCTGTCGC CGCGGCAGTT CCACGAGGGC
CTCGTCGAGT CCGTCGGCCG CTGCCTCGCG CAGACGCAGC TCGACCCGGG CGCGCTCGAG
CTGGAGATTA CCGAAGGACT GCTGATGAAC GACACGGACA CCGTGCTGCC GATGCTCGAG
GCGCTCACGG ACATGAACGT GCGGATCTCG GTCGACGATT TCGGCACCGG CTATTCGTCG
CTCGCGTACC TGAAGCGGTT TCCGCTGCAT AACCTGAAGG TCGACCGTTC GTTCGTGTCG
GGCGTGCCCG ATCATCGCGA CTCGGTCGCG ATCACGCAGG CCGTCGTCGC GATGGCGCAT
TCGCTCGGGA TGAAGGTCAC CGCGGAAGGT GTCGAGACTG AGGCGCAGTC GTGGTTCCTG
CAGCAGATCG GCTGCGACAT GCAGCAGGGC TACCTGTTCG GCCGGCCGCT CGATCCGGCC
GACTACGCAC GCCGGCTCGT CACCGTATAG
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| Protein sequence | MNTEPQSSRY SLGLAAEVLA SEQSVLRLIT RNTPLPELLV EVCRRAEALL GEGASCTILL
LDADGVHVHV GAAPSLPAQY SAAIEGATIG PAAGSCGTAM YERRMIAVED IETDPLWADY
RAFALPLGLR ACWSVPFLDE TGTVLGAFAV YHRAPRRPSD TETDLLRDIG NSVGLAVHQD
SIARQLVHSE EQHRLVVNSL NEGILMLSPD GVVIASNPSA NRMMRVKGEL VGRRLSSVIL
YKLREDGTPI APDDWPSRLA FTTATPLLDY SVGFGLADGD IIWVRGNAVP IVKPGETRPE
SVLVSFHDIG PVREAQQQLR YLATRDALTG LYNRRWLSER MRELFGTHDA AAGPARVAIL
FIDLVGFKKV NDTAGHDAGD ALLRSVAARL AACAGGRHAL TRVGGDEFVI LVDQCDDPDE
LSALAREVID TIAKPFAIAN NEYWLGVSIG ISVAPRDGDD AVTLMRNADS AMYDAKQRGR
NHFTFFTAQL NLRLQRRFAI EQSLRRAILS DALRLAYQPV VDARSGRTVG AEALLRWTSP
ELGPMSPTEF IPVAEDTGLI VAIGQWVLET ACRQAAEWRR TIAPDLMLAV NLSPRQFHEG
LVESVGRCLA QTQLDPGALE LEITEGLLMN DTDTVLPMLE ALTDMNVRIS VDDFGTGYSS
LAYLKRFPLH NLKVDRSFVS GVPDHRDSVA ITQAVVAMAH SLGMKVTAEG VETEAQSWFL
QQIGCDMQQG YLFGRPLDPA DYARRLVTV
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