Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3424 |
Symbol | |
ID | 4312159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 219121 |
End bp | 220539 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638151266 |
Product | type II secretion system protein E |
Protein accession | YP_775312 |
Protein GI | 115358174 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.546087 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.677685 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGTTCG GTACCCGCAA ACGGTCGACG CCGGAGCCTG CACCGGCAGT GGCCCCGGCC GCGCCGCGCG ACGACGCGCC CGCGCCGGCG CCGGCACCGA TCGCGAGCCA CGCGCCGCCG CCGCTGCGCG GGGCCGCGGC GGCCGACACG CAGGAGTCGC TGATCCGCTC CGGCAAGTTC GATGCGATTC GCACCGCGGT GTTCTCGTCG ATGAACATGT CGGCGGCATT GATGAAGACG CGCGACGAAG TGCGCGCGGG CATCGAGCAG GTGGCCGCGC ACACCGTCGA GCGCGAGCGC CTGAAGATCA CGGCGGGCGA GCAGGTGCTG ATCGTCGACG CGATCCTGAA TGACATGTTC GGCGTCGGGC CGATCGAGCC GCTGCTCGCC GACGACACCG TGTCCGACAT CCTCGTGAAC GGCCCCGACC AGGTGTACGT CGAGCGCGCG GGGCGGCTTG AACTCACGTC GCTGAAGTTT CGCGACAACG CGCACGTGAC GAGCGTCGCG CAGCGGATCG CGGCGGCGGT CGGGCGCCGT GTCGACGAGA GCAGCCCGAT GGTCGACGCG CGCCTGGCCG ACGGCAGCCG CGTGAACGTG GTGCTGCCGC CGATCGCGAT GCGCGGCGCG TCGATCTCGA TCCGCAAGTT CGCGAAGCGC GACATTACGC TCGCGCGGAT GGCGCACCAG GGCAACATCT CGCACGGGAT GCTGCAAGTG CTGAAGATCG CCTGCGCGTG CCGGCTGAAC ATCGTGATCT CGGGCGGTAC CGGCTCGGGC AAGACGACGC TGCTGAACGC GCTGTCGCAG CACATCGAGG AGCACGAGCG GATCGTGACG ATCGAGGATG CGGCCGAGCT GCAACTGCTG CAGCCGCATG TCGTGAGTCT CGAGACGCGC CCGGAGAATA CCGAAGGGCT CGGCGGAATC TCGCAGCGCG ACCTCGTGCG CAATGCGCTG CGGATGCGGC CCGATCGCAT CATCCTCGGC GAAATCCGCG GCGCGGAGGC ATTCGACGTG CTGCAGGCGA TGAATACGGG CCACGACGGC TCGATGACGA CGATCCATGC GAACACGCCG CGCGACGCGA TCAGCCGGCT CGAAAGCATG GTGATGATGG CGAACGCGAA CCTGCAGCTG CTGTCGATCC GGCGCCAGAT CGCGAGCGCC GTGCACCTGT TCGTGCAGAT CGAGCGAATG CGCGACGGCG TGCGTCGCGT GACGCGGATC ACCGAGATCG TCGGGATGGA AGGCGAGGTC GTGATCACGC AGGATCTGTT CACGTTCCGC CAGGACAGCG ACACGACGCG CGACGTGGTG AAAGGGGTGT TCGAGGCGTC GTCGCTGCGC CCCGCGTTCG CCCCGCGTGC CGCGTACTAC GGCATGGAGG ACGCGCTCTC CGAGGTATTC CGGCAATGA
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Protein sequence | MTFGTRKRST PEPAPAVAPA APRDDAPAPA PAPIASHAPP PLRGAAAADT QESLIRSGKF DAIRTAVFSS MNMSAALMKT RDEVRAGIEQ VAAHTVERER LKITAGEQVL IVDAILNDMF GVGPIEPLLA DDTVSDILVN GPDQVYVERA GRLELTSLKF RDNAHVTSVA QRIAAAVGRR VDESSPMVDA RLADGSRVNV VLPPIAMRGA SISIRKFAKR DITLARMAHQ GNISHGMLQV LKIACACRLN IVISGGTGSG KTTLLNALSQ HIEEHERIVT IEDAAELQLL QPHVVSLETR PENTEGLGGI SQRDLVRNAL RMRPDRIILG EIRGAEAFDV LQAMNTGHDG SMTTIHANTP RDAISRLESM VMMANANLQL LSIRRQIASA VHLFVQIERM RDGVRRVTRI TEIVGMEGEV VITQDLFTFR QDSDTTRDVV KGVFEASSLR PAFAPRAAYY GMEDALSEVF RQ
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