Gene Bamb_3424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3424 
Symbol 
ID4312159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp219121 
End bp220539 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content68% 
IMG OID638151266 
Producttype II secretion system protein E 
Protein accessionYP_775312 
Protein GI115358174 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.546087 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.677685 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGTTCG GTACCCGCAA ACGGTCGACG CCGGAGCCTG CACCGGCAGT GGCCCCGGCC 
GCGCCGCGCG ACGACGCGCC CGCGCCGGCG CCGGCACCGA TCGCGAGCCA CGCGCCGCCG
CCGCTGCGCG GGGCCGCGGC GGCCGACACG CAGGAGTCGC TGATCCGCTC CGGCAAGTTC
GATGCGATTC GCACCGCGGT GTTCTCGTCG ATGAACATGT CGGCGGCATT GATGAAGACG
CGCGACGAAG TGCGCGCGGG CATCGAGCAG GTGGCCGCGC ACACCGTCGA GCGCGAGCGC
CTGAAGATCA CGGCGGGCGA GCAGGTGCTG ATCGTCGACG CGATCCTGAA TGACATGTTC
GGCGTCGGGC CGATCGAGCC GCTGCTCGCC GACGACACCG TGTCCGACAT CCTCGTGAAC
GGCCCCGACC AGGTGTACGT CGAGCGCGCG GGGCGGCTTG AACTCACGTC GCTGAAGTTT
CGCGACAACG CGCACGTGAC GAGCGTCGCG CAGCGGATCG CGGCGGCGGT CGGGCGCCGT
GTCGACGAGA GCAGCCCGAT GGTCGACGCG CGCCTGGCCG ACGGCAGCCG CGTGAACGTG
GTGCTGCCGC CGATCGCGAT GCGCGGCGCG TCGATCTCGA TCCGCAAGTT CGCGAAGCGC
GACATTACGC TCGCGCGGAT GGCGCACCAG GGCAACATCT CGCACGGGAT GCTGCAAGTG
CTGAAGATCG CCTGCGCGTG CCGGCTGAAC ATCGTGATCT CGGGCGGTAC CGGCTCGGGC
AAGACGACGC TGCTGAACGC GCTGTCGCAG CACATCGAGG AGCACGAGCG GATCGTGACG
ATCGAGGATG CGGCCGAGCT GCAACTGCTG CAGCCGCATG TCGTGAGTCT CGAGACGCGC
CCGGAGAATA CCGAAGGGCT CGGCGGAATC TCGCAGCGCG ACCTCGTGCG CAATGCGCTG
CGGATGCGGC CCGATCGCAT CATCCTCGGC GAAATCCGCG GCGCGGAGGC ATTCGACGTG
CTGCAGGCGA TGAATACGGG CCACGACGGC TCGATGACGA CGATCCATGC GAACACGCCG
CGCGACGCGA TCAGCCGGCT CGAAAGCATG GTGATGATGG CGAACGCGAA CCTGCAGCTG
CTGTCGATCC GGCGCCAGAT CGCGAGCGCC GTGCACCTGT TCGTGCAGAT CGAGCGAATG
CGCGACGGCG TGCGTCGCGT GACGCGGATC ACCGAGATCG TCGGGATGGA AGGCGAGGTC
GTGATCACGC AGGATCTGTT CACGTTCCGC CAGGACAGCG ACACGACGCG CGACGTGGTG
AAAGGGGTGT TCGAGGCGTC GTCGCTGCGC CCCGCGTTCG CCCCGCGTGC CGCGTACTAC
GGCATGGAGG ACGCGCTCTC CGAGGTATTC CGGCAATGA
 
Protein sequence
MTFGTRKRST PEPAPAVAPA APRDDAPAPA PAPIASHAPP PLRGAAAADT QESLIRSGKF 
DAIRTAVFSS MNMSAALMKT RDEVRAGIEQ VAAHTVERER LKITAGEQVL IVDAILNDMF
GVGPIEPLLA DDTVSDILVN GPDQVYVERA GRLELTSLKF RDNAHVTSVA QRIAAAVGRR
VDESSPMVDA RLADGSRVNV VLPPIAMRGA SISIRKFAKR DITLARMAHQ GNISHGMLQV
LKIACACRLN IVISGGTGSG KTTLLNALSQ HIEEHERIVT IEDAAELQLL QPHVVSLETR
PENTEGLGGI SQRDLVRNAL RMRPDRIILG EIRGAEAFDV LQAMNTGHDG SMTTIHANTP
RDAISRLESM VMMANANLQL LSIRRQIASA VHLFVQIERM RDGVRRVTRI TEIVGMEGEV
VITQDLFTFR QDSDTTRDVV KGVFEASSLR PAFAPRAAYY GMEDALSEVF RQ