Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3421 |
Symbol | |
ID | 4312156 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 216099 |
End bp | 217481 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638151263 |
Product | type II and III secretion system protein |
Protein accession | YP_775309 |
Protein GI | 115358171 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.195466 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.703201 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGCGCA TGGTTCGTTG GATCGCTTTC TGGTGTCTGG CCTGCATCGT CGCGCCGGGC GTCGCGCTCG CGCAGCGCGC GCACGCGGTC GAAGCCGGCG CGACGTTGTC GATCGCGACC GGCAAGGGCG AGATGCTGTC GCTGTCCGAA CCAGCGACCG CGATGTTCGT CGCGGATCCG AGCATCGCCG ACATCCAGGT GCCGTCGCCG CGCACCGTGT TCGTGTTCGG CAAGAAGGCC GGCACCACCA CGCTGATCGC GCTCGGCGCG AACCATCGTC CGATCCTGCG CAAGACGGTG ATCGTGCAGG TCGACACCGT ATCGCTGCAG GCGGTGCTCG ACAGCCGCTT TCCGCAATTG AAGCTGTCGG TGTCCGGCGC GCCGGGCTCG CTGATGGTGT CGGGCAAGGT GCCGAGCGCG GCCGACGCGG ACGCCGTGAT GCAGTCGCTC GCGCCCTACC TGAACGACAA GGAAAGGATC GTCAACCGGC TCACCCTGTC GCGCCCGATC CAGGTGAACC TGCGCGTGCG CGTGACCGAA GTGAGCCGCA ACGTCACGCA GCAGCTCGGC ATCAACTGGA GCTCGCTCGG CGCGGCCGGC AACTTCATCG GCGGGCTGTT CAACGGGCGC ACGCTGATGG ATCCGACGAA CAGGCTGTTC AACCTGTCGC CGACCGGCGC GTACTCGGTG CTCGGCGGCT TCCACACAGG GCGCTGGTCG ATCGACGTCG TGCTCGACGC GCTCGACCAG GAAGGGCTGA TCACGATGCT CGCGGAGCCG AACCTCACCG CGATGTCCGG CCAGACCGCG AGCTTCCTCG CGGGTGGCGA GATTCCGATT CCGGTCGCGC AGGCCGGCAA CACGACCGGC GCGATCACGG TCGAGTTCAA GCCGTTCGGC GTGTCGCTCG ATTTCACGCC GACCGTGCTC GCCGACAACC GGATCAGCCT GAAGGTGCGT CCGGAAGTGA GCGAGGTCGA CGCGAACAAC AGCGTGACGA CCGGCGGCGT GACGGTGCCG GGGCTCACCG TGCGGCGCGT CGAGACGACG GTCGAACTGT CCAGCGGGCA GAGCTTCGCG ATCGGCGGGC TGCTGCAGAG CCAGACGGCC AATACCGTGT CGCAGATTCC GGGGCTCGGC CGGCTGCCGA TCATCGGCCG GCTGTTTTCG TCGAAGAACT TCCAGGACAA CAAGACCGAG GTCGTCGTGA TCGTGACGCC GTACATCGTG CAGCCGACCG GCCCCGGCCA GCTCGAACAG GCGCTCGACA CCGTCGCCCG GCCGAGCAGC GATCTCGAGT TCGCGGTGCA GCGCAATCTC GGGCTCGATC TGATGTCGGG CGAAACGCCG CGCCCCGTCG GCGCCGCGGG CTTCGTGTAT TGA
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Protein sequence | MVRMVRWIAF WCLACIVAPG VALAQRAHAV EAGATLSIAT GKGEMLSLSE PATAMFVADP SIADIQVPSP RTVFVFGKKA GTTTLIALGA NHRPILRKTV IVQVDTVSLQ AVLDSRFPQL KLSVSGAPGS LMVSGKVPSA ADADAVMQSL APYLNDKERI VNRLTLSRPI QVNLRVRVTE VSRNVTQQLG INWSSLGAAG NFIGGLFNGR TLMDPTNRLF NLSPTGAYSV LGGFHTGRWS IDVVLDALDQ EGLITMLAEP NLTAMSGQTA SFLAGGEIPI PVAQAGNTTG AITVEFKPFG VSLDFTPTVL ADNRISLKVR PEVSEVDANN SVTTGGVTVP GLTVRRVETT VELSSGQSFA IGGLLQSQTA NTVSQIPGLG RLPIIGRLFS SKNFQDNKTE VVVIVTPYIV QPTGPGQLEQ ALDTVARPSS DLEFAVQRNL GLDLMSGETP RPVGAAGFVY
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