Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3374 |
Symbol | |
ID | 4312234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 169507 |
End bp | 170664 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638151215 |
Product | porin |
Protein accession | YP_775262 |
Protein GI | 115358124 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAC TCGCTCTCTC GACCCTCTCG CTCGCCCTGC TGGGCGCCGC CGGCGCTGCT CATGCTCAGT CGAGCGTGAC GCTGTACGGC GTGATCGACA CGTCGATCGC ATGGGTTCAC GGCAACAACG GTCAAGCCAA CAACTCGTGG CAAATGCTGT CGGGCAACCT GCAAGGCAGC CGTTGGGGCC TGAAAGGCGC TGAAGACCTC GGCGGCGGCC TGAAGGCGAT CTTCCAGTTG GAAAACGGTT TTGATCCGGG CACGGGCCAC CTGAACCAGG GCAGTCGCAT GTTCGGTCGT CAGGCGTTCG TCGGCCTCCA GAGCGACCAG TACGGTACGC TGACGCTCGG CCGCCAGTAC GACCCGCTGG TCGACCTGGT CCAGGCAGTG ACGGCTGACA ACTACTTCGG CAGCGTGATG GCAACGCCGG GCGACGTCGA CAACAACGAC AACTCGCTGC GCGTCAGCAA CGCAATCAAG TACACGTCGC CGGTCTGGGG CGGCTTCCAG GTCGAAGGCA TGTACGCCCT CGGCGGCGTT GCAGGCAAGA CGGGTTCGGG CCAGACGTGG TCGGTCGCGG CTGCCTACAA CAACGGCCCG GTCGGCGTTG CAGCAGGCTA CTTCTACGCA GCCAACCCGT CGCCGACGAC GGCTGTCGGC CGCGCAGGCT GGGGTTCGAC GACGTCCGAC GCGATCTTCG ACGGCCCGAT CAACTCGGGT TACGCAACGG CGAAGTCGAT CGCCATCGCG CAAGTCGCAG GTCAGTACGC ACTGGGCCCG GTGACGTTCG GCCTCGGCTA CAGCAACGCA CAGTACAAGC CGGATGCATT CTCGGGCTTC GGTTCGACCG AAAAGTACAA CACGGGCCGC GCGTTCGTGA CGTACCAGGT CACGCCGCCG CTGCTGCTGG GCCTCGGCTA CTCGTACACG CGAGCCAGCG GCGACACGAA GGCGAAGTAC CACCAAGTCG GTGTCGGCGC GGACTACTCG CTGTCGAAGC GCACGGACAT CTACCTGGTT GGCGCATACC AGCACGCGAG CGGTACGCAG CTCGTCGACG GCGTGCAGCA AAGCGCGCAA GCGTCGATCG CTTCGTACGG TTTCGCCGGC AAGAGCTCGG CCGAACTCGT CGCGCTCGGC ATTCGTCACA AGTTCTAA
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Protein sequence | MKKLALSTLS LALLGAAGAA HAQSSVTLYG VIDTSIAWVH GNNGQANNSW QMLSGNLQGS RWGLKGAEDL GGGLKAIFQL ENGFDPGTGH LNQGSRMFGR QAFVGLQSDQ YGTLTLGRQY DPLVDLVQAV TADNYFGSVM ATPGDVDNND NSLRVSNAIK YTSPVWGGFQ VEGMYALGGV AGKTGSGQTW SVAAAYNNGP VGVAAGYFYA ANPSPTTAVG RAGWGSTTSD AIFDGPINSG YATAKSIAIA QVAGQYALGP VTFGLGYSNA QYKPDAFSGF GSTEKYNTGR AFVTYQVTPP LLLGLGYSYT RASGDTKAKY HQVGVGADYS LSKRTDIYLV GAYQHASGTQ LVDGVQQSAQ ASIASYGFAG KSSAELVALG IRHKF
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