| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3309 |
|---|
| Symbol | |
|---|
| ID | 4312311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 100886 |
|---|
| End bp | 101872 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638151151 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_775198 |
|---|
| Protein GI | 115358060 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01759] malate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.49865 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC CCGCAAAGCG CGTTGCCGTC ACCGGCGCCG CAGGTCAAAT CGCATACTCC
CTGCTGTTCC GCATCGCGAA CGGCGACCTG CTCGGCAAGG ACCAGCCGGT CATCCTGCAA
CTGCTCGACC TCCCGCAAGC CCAAGCCGCC GTCAAAGGCG TCGTGATGGA GCTCGACGAT
TGCGCGTTCC CGCTGCTCGC GGGCGTCGTG ATCACCGACG ATCCGAAGGT TGCATTCAAG
GATGCAGACG TCGCTCTGCT GGTCGGCGCA CGTCCGCGCT CGAAGGGCAT GGAGCGCAAG
GACCTGCTGT CGGCGAACGC CGAGATCTTC ACGGTCCAGG GCGCCGCGCT GAACGAAGTC
GCGAGCCGCG ACGTGAAGGT GCTGGTCGTC GGCAACCCGG CGAACACCAA CGCGTACATC
GCCATGAAGT CGGCACCGGA TCTGCCGAAG AAGAACTTCA CGGCCATGCT GCGCCTCGAC
CACAACCGCG CGCTGTCGCA GCTCGCCGCG AAGTCGGGCA AGCCGGTCGC ATCGATCGAG
AAGCTCGCCG TGTGGGGCAA CCACTCGCCG ACGATGTACC CCGACTTCCG CTTCGCGACC
GCCGAAGGCG AGTCGCTGCT GAAGCTGATC AACGACGACG TGTGGAACCG CGACACGTTC
ATCCCGACCG TCGGCAAGCG CGGCGCGGCG ATCATCGAAG CGCGCGGCCT GTCGTCGGCA
GCGTCGGCAG CCAACGCGGC GATCGACCAC GTGCGTGACT GGGTCCTCGG CACGAACGGC
AAGTGGGTCA CGATGGGCAT CCCGTCGGAC GGCTCGTACG GCATCCCCGA AGACATCATC
TACGGCGTGC CGGTCGTGTG CGAAAACGGC GAGTACAAGC GCGTCGAAGG CCTGGAAATC
GACGCGTTCT CGCGCGAGAA GATGGACGGC ACGCTGGCCG AGCTGCTCGA AGAGCGCGAC
GGCGTCGCCC ATCTGCTGAA GAACTAA
|
|---|
| Protein sequence | MAKPAKRVAV TGAAGQIAYS LLFRIANGDL LGKDQPVILQ LLDLPQAQAA VKGVVMELDD
CAFPLLAGVV ITDDPKVAFK DADVALLVGA RPRSKGMERK DLLSANAEIF TVQGAALNEV
ASRDVKVLVV GNPANTNAYI AMKSAPDLPK KNFTAMLRLD HNRALSQLAA KSGKPVASIE
KLAVWGNHSP TMYPDFRFAT AEGESLLKLI NDDVWNRDTF IPTVGKRGAA IIEARGLSSA
ASAANAAIDH VRDWVLGTNG KWVTMGIPSD GSYGIPEDII YGVPVVCENG EYKRVEGLEI
DAFSREKMDG TLAELLEERD GVAHLLKN
|
|---|
| |