| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3297 |
|---|
| Symbol | |
|---|
| ID | 4312299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 85956 |
|---|
| End bp | 87002 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638151139 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_775186 |
|---|
| Protein GI | 115358048 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.519451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGAG CAAGCTCAAC CGCACGTCGC ACCGCGCTCG CACTGGCACT GGCTGTCGTC
GGCGCATCGG CCACGGCGGC CGAACTCACG GTCGTCAACT TCGGCGGCGC GAACGGCGAC
GCGCAGAAAG CCGCATTCAA CCAGCCGTTT GAGAAGGCGA CCGGCAACAA GGTCACGGCC
GTCGAGTACA ACGGCGAGCA GGCTAAAGTG AAGGCGATGG TCGAGGCGAA GCACGTCAAC
TGGGACGTGG TCGAAGTCGA ATCGGGCGAC CTGAACCGCG GCTGCGACGA AGGGCTGTAC
GAGAAGCTCG ACTGGTCGAA GATCGCGAAG AAGTCCGACC TGATTCCGGA AGCGCCGCAG
GTGTGCGGCG TCGGCTTCTT CGTGTGGTCG ACCGCGCTGT CCTATAACGC GGACAAGCTG
AAGTCCGCGC CGACCGGCTG GGCCGATTTC TGGAACGTGA AGAAATTCCC CGGCAAGCGC
GGGATGCGCA AGGGCGCGCG CTACAACCTC GAATTCGCGC TGATGGCTGA CGGCGTCGCG
ACGAAGGACG TGTACAAGGT GCTCGGCACG AAGGCCGGCC AGGACCGCGC GTTCAAGAAG
CTCGACGAGC TGAAGCCGTA CATCCAGTGG TGGGAAGCCG GCGCGCAGCC GCCGCAGTTC
CTGGTGGCCG GCGACGTCGT GATGTCGACC GCGTACAACG GCCGCATCGA TGCCGCGCAG
AAGGAAGGCA AGAACCTGAA GGTCGTGTGG AACGGCAGCA TCTACGACCT CGACTACTGG
GCGATTCCGA AGGGCTCGCC GAACAAGGCG CTGGCCGAGA AGTACATCGC GTACACGCTC
ACGCCGAAGC CGCAGCAAGC GTATGCGCAG CACATCGCGT ACGGGCCGAC GAACGTCGCG
GCGATCAAGT CGCTCGACGC GAAGACGCTC GCGAACCTGC CGAACTCGCC GGCCAACGGC
AAGAACGCGG TGCTGGAGGA CATCGGCTTC TGGACCGACC ACAGCGACGA GCTCGAGCAG
CGCTTCAGCG CATGGGCCAC GAAGTAA
|
|---|
| Protein sequence | MNGASSTARR TALALALAVV GASATAAELT VVNFGGANGD AQKAAFNQPF EKATGNKVTA
VEYNGEQAKV KAMVEAKHVN WDVVEVESGD LNRGCDEGLY EKLDWSKIAK KSDLIPEAPQ
VCGVGFFVWS TALSYNADKL KSAPTGWADF WNVKKFPGKR GMRKGARYNL EFALMADGVA
TKDVYKVLGT KAGQDRAFKK LDELKPYIQW WEAGAQPPQF LVAGDVVMST AYNGRIDAAQ
KEGKNLKVVW NGSIYDLDYW AIPKGSPNKA LAEKYIAYTL TPKPQQAYAQ HIAYGPTNVA
AIKSLDAKTL ANLPNSPANG KNAVLEDIGF WTDHSDELEQ RFSAWATK
|
|---|
| |