Gene Bamb_3230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3230 
Symbol 
ID4312285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp10771 
End bp11880 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content70% 
IMG OID638151072 
ProductPHB depolymerase family esterase 
Protein accessionYP_775120 
Protein GI115357982 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3509] Poly(3-hydroxybutyrate) depolymerase 
TIGRFAM ID[TIGR01840] esterase, PHB depolymerase family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.891696 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.152859 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAAA GTCTGACGAA GGTATGGCTG GGGGGCGTGA AACGCATGCT GTCCCCGGCT 
GCCAAACGTG GGGCGCGCGA TGCACAGCGG ATCGCGCGCG ATACGCTCGA GGCCGCGGCC
TCGAGCGCCG CTACCGATCT GTCCCCGCCG CGCGAGTCGC GCGTGCGGCC GCGCGCGGCT
GCATGGGCGG CAGGCGAGTG GACGCGTGGC GAGCATCCAA TGGCGCCCGC GCTCGGCCGC
CTCGTCCAGC AGCTCGCATA CGGGCTTTAT GTCCCGCCCG GCCGGCGGCG CGGCGCGATG
CCGCTCGTCG TGATGCTGCA CGGTTGCCAG CAATCGGTCG ACGAGTTTGC GCAGGGCACG
CGAATGAACC TGCTGGCCGA CAAGCACGGC TTCGCCGTGC TGTATCCGGA GCAGTCGCAG
CGTGCGCACG CGCACGGCTG CTGGCACTGG TATGAGGATA CCGATCGCGC GGGTCGTGGC
GAAGCGGATA CGGTCGCGTC GCTGATTGAT GCGTTGGTTG ACGAGCACGG TTTCGACGCA
TCGCGCGTCT ACGTCGCGGG GTTGTCGGCC GGCGCGGGGC TGGCGGCGCT GCTCGCACTG
CACCATCCGG ATCACTTCGC GGCGGTCGCG CTGCACTCGG GCCCCGCCCT CGGCGAGGCG
AATTCCGGCA TCAGTGCGAT GGACGTGATG CGGCGCGGGC TGCGGGAGAA CCCGGCGGCC
GTGCTCGATG CGCTGATCGA CGCCAGTGCG TATCCGGGCA TGCCCGCGCT GATCGTGCAG
GGTGACGCCG ACCATGTCGT CGCGCCGAAG AATGCGGACC AGCTCACGGT GCAGTTCATG
CGCCTGAACG GGCTCGCGGA TAGCCGCGGC GCACTGCGCG GCGGCGATCG CGTGGAGACG
CGCGAGGCGG GCGCGCACAT CACCGACGTG CGCCGCGACG GGGAGCCGGT CGTGCGGCTT
TGCCACGTCA AGGGGCTCGA TCATGCGTGG GCCGGCGGCG ACGAAGCCGT ACCGTTTCAT
GCGGCGGTTG GCCCCGATGC GAGCGCGATG ATCTGGTCCT TTTTCGAACA GAATCGTCGC
ACTGTGGCGA CCGAACGACG CACCGTCTGA
 
Protein sequence
MTKSLTKVWL GGVKRMLSPA AKRGARDAQR IARDTLEAAA SSAATDLSPP RESRVRPRAA 
AWAAGEWTRG EHPMAPALGR LVQQLAYGLY VPPGRRRGAM PLVVMLHGCQ QSVDEFAQGT
RMNLLADKHG FAVLYPEQSQ RAHAHGCWHW YEDTDRAGRG EADTVASLID ALVDEHGFDA
SRVYVAGLSA GAGLAALLAL HHPDHFAAVA LHSGPALGEA NSGISAMDVM RRGLRENPAA
VLDALIDASA YPGMPALIVQ GDADHVVAPK NADQLTVQFM RLNGLADSRG ALRGGDRVET
REAGAHITDV RRDGEPVVRL CHVKGLDHAW AGGDEAVPFH AAVGPDASAM IWSFFEQNRR
TVATERRTV