| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2686 |
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| Symbol | |
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| ID | 4310032 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 2957332 |
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| End bp | 2960007 |
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| Gene Length | 2676 bp |
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| Protein Length | 891 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638150524 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_774576 |
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| Protein GI | 115352737 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.308688 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAGAA GCGCATTGCT GGCCGGACCG GTTCAGCACG AGCGCCTTGT CAAACTGGAT
ACGCCGCTGG GCCCCAACGT GCTGCTGCCG CATCGCGTCA TCGGCCGATC ACGGCTCGGG
CGTCACTTCG AGTTCACGGT CGATACCGTG TCGGTATCCG ACAACCTCGA GCTCAAGAAG
CTGATCGCGC AGCCCGTCAC GCTGTGGATC CTGCAGGCCG ACCAGTCTTA TGCGCCTCAC
CACGGCTACG TGCATTGCGC CCGCAGGCTC GGCTCGGACA GCGGCGTCAC GCACTACCAG
ATCGTCTTCG CTTCGTTCCT GCACTTCCTG AAGTTCCGCC GCGACCAGCG AATCTGGCAG
GACCAGTCCG CGGACGACAT CATTGCCGAC GTGCTGAACC AGCATCCGCA GGCCAAGGGT
CGCTTCACCT TCAAGCTCCA CCAGCCGCTG CCGCTCCGCT CGTTCTGCAT GCAGTACGAG
GATGACTGGA ATTTCGTGCA TCGCCTGATG GAATCCGAAG GCCTGTATGG CTTCTGGGAA
CAGGACCAGG ACGGCAAGTC GCACCGGCTC GTCGTCGTCG ACCGCGTCGA CGCATTGCCC
GCGCTATCGC CGCGAACGGT GCGCTTTCAT CATGCGGGCA CGGGTGACGA GGCCGACACG
TTCGTCCAGT TCTCCGGCAC GCGCACGCTG CGAAGCGTCG CCCGCGCGAC ACGCACGTTC
GACTATAAGC AGCCGCCGAG CGCGGCCAAT CCGAAGGCGA CCCATACGCC GACGATCGCC
AATCAGGGCG ACCTGCCGCC GCAGCTCGAG GTCTACGAAT ACACCGGTGC GTACACGTAT
CCCGAACAGT CCCGCGGTGA CCATCTGTCG AAGATATGGA TGGAGGAACA GGAGTCGCGC
GCGAAACGCT TTCATGGCGT CGGCGGCGTG CGGCGCATGG ATGCCGGGCG GACCTTCGAG
CTGGCGGATC ACGCCGAACA CGACAAGGAC GATGCCGGGC AGCGCGAATT CGCCGTGATC
GAGACGGCGT GGGTCATCGT CAACAACCTG CCCGTTGCGG ACGAACAGGC GGTTTTCCCG
CACAGCCTGC AAGCCGAGGT CGGCAGCATC GTGTTGGCAA CCAATACGGG CCAGTCGCGC
GTGCGTCATC CCGACGGCAG CGAAGGCTTC TTTCAGATCC GCGTCGAAGC CCAGCGCACG
ACCGTACCGT TCCGCAGCCC GCTCGAGCAT GCGAAACCCG CGATGCATTT GCAAACGGCG
ATCGTCGTCG CGCCGCAGGG CGAAGAAGTC CATACCGACG CACTCAACCG GGTCAAGGTT
CGCTTCCATT GGGACCGCCT GAACGACGGC GACGAAAAGG CGTCGTGCTG GCTGCGTGCC
ACCGCGTCGG ATTCGGGCAA TGGTTATGGG GCCGTTCACC CGCACCGCAG CGGCGAGGAG
GTGCTGGTCG ATTTCCTCGG CGGCGACTGC GATCGCCCGA TCATCGTCGG CAAGGTCTAC
AACGGCGCGA CCAGTCCGCA ATGGCACAGC AACGGCATTC TGTCCGGATA CCGGTCGAAA
GAATACGCGG GCGCCGGCTA CAACCAGCTC GTGCTCGACG ACGCGACCTC GCAGAACCGC
GTGCACCTGT ACAGCAGCCA GACCAACGCG CACCTGCATC TCGGCTACCT GATCGACCAC
ACGGGCAACA ACCGCGGCAG CTATCTCGGC AGTGGTTTCG ACCTGCGCTC CGACGCATAC
GGCGCCGTGC GCGCGAACCG CGGCCTGTAC GTCACGACGC ATCCGAAACA GCCGGCGAGC
CAGCCGCTCG ACGTCGGCGA GACACAGCAG CAGCTCGTTC GCGCCGAAGG CCTGCTGGAG
GCCATGTCGG ATGTCAGCGC CCAGCATCAG GCCGAGTCGC TCGACCCCGG CCACTCGGCG
CTGAAGCAGT TCACCGACGC AACGCAGAGC AGCGCGAGCG GCAGCGCGTC GGGCGGCCGG
ACCGCCGCCG GCGGAACCGG TAGCGCCAAT GCGTTCAAGG AGCCCGTGAT GCTGTTCGGC
AGCCCGGCCG GTATCGGGAT GTCGACACAA CAGTCCGTGC AGCTTGCCGC GGACCAGCAC
GTCAACCTCG TCAGCGGGCA AAGCACGCAC GTGGCCGCCG GAAAGTCGCT GATCGCGAGC
GTCCTCGACC GGATCAGCCT GTTCGCGCAG AACTCCGGGA TCAAGCTGTT CGCCGGCAAG
GGCAAGGTCG AAGTGCAGGC GCACGCGGAC AACATCGAAC TGACCGCCCA GAAGGCGCTG
AAGCTGATGG CGGTCACCGA GTCGATCGAA GGCGCCGCGG CGAAGGAAAT CCTGCTGACT
TCCGGCGGCG CGTACATCCG CATCGCGAAC GGCAACATCG AAGTGCACGC ACCCGGCAAG
ATCGACATCA AGGGTGCGCA GCACGTGTTC AGCGGCCCCA CGCACCTGTC GCAAACGATG
CCGACCCTGC CGAACTCGAC CGGCAACTAC GATCAGGCGT TCATCGCGCA CTGGGCCGGC
ACCGACATTC CGGTAGCGAA CACGCGATAC CAGATGTTCT CGAACGGCAA GCTGCTCTCG
GAAGGCGTCA CCAATGCGGC AGGTGAGACG GGGCTCACGC AGAGCCACGT GCCGCACGAC
GTCGTCGTCA AGTTTCTAGG GAAATCGAAT GGCTGA
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| Protein sequence | MLRSALLAGP VQHERLVKLD TPLGPNVLLP HRVIGRSRLG RHFEFTVDTV SVSDNLELKK
LIAQPVTLWI LQADQSYAPH HGYVHCARRL GSDSGVTHYQ IVFASFLHFL KFRRDQRIWQ
DQSADDIIAD VLNQHPQAKG RFTFKLHQPL PLRSFCMQYE DDWNFVHRLM ESEGLYGFWE
QDQDGKSHRL VVVDRVDALP ALSPRTVRFH HAGTGDEADT FVQFSGTRTL RSVARATRTF
DYKQPPSAAN PKATHTPTIA NQGDLPPQLE VYEYTGAYTY PEQSRGDHLS KIWMEEQESR
AKRFHGVGGV RRMDAGRTFE LADHAEHDKD DAGQREFAVI ETAWVIVNNL PVADEQAVFP
HSLQAEVGSI VLATNTGQSR VRHPDGSEGF FQIRVEAQRT TVPFRSPLEH AKPAMHLQTA
IVVAPQGEEV HTDALNRVKV RFHWDRLNDG DEKASCWLRA TASDSGNGYG AVHPHRSGEE
VLVDFLGGDC DRPIIVGKVY NGATSPQWHS NGILSGYRSK EYAGAGYNQL VLDDATSQNR
VHLYSSQTNA HLHLGYLIDH TGNNRGSYLG SGFDLRSDAY GAVRANRGLY VTTHPKQPAS
QPLDVGETQQ QLVRAEGLLE AMSDVSAQHQ AESLDPGHSA LKQFTDATQS SASGSASGGR
TAAGGTGSAN AFKEPVMLFG SPAGIGMSTQ QSVQLAADQH VNLVSGQSTH VAAGKSLIAS
VLDRISLFAQ NSGIKLFAGK GKVEVQAHAD NIELTAQKAL KLMAVTESIE GAAAKEILLT
SGGAYIRIAN GNIEVHAPGK IDIKGAQHVF SGPTHLSQTM PTLPNSTGNY DQAFIAHWAG
TDIPVANTRY QMFSNGKLLS EGVTNAAGET GLTQSHVPHD VVVKFLGKSN G
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