| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2275 |
|---|
| Symbol | |
|---|
| ID | 4311726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 2510461 |
|---|
| End bp | 2511951 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638150108 |
|---|
| Product | NADH dehydrogenase subunit M |
|---|
| Protein accession | YP_774165 |
|---|
| Protein GI | 115352326 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
|---|
| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.229712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCTT TTCCGATTCT CAGTACCGCG ATCTGGCTGC CGATCGTTTT CGGCCTCCTC
GTGCTCGCGG TGGGTAACGA CAAAAATCCG GGCACGGCCC GCTGGGTCGC GCTGATCGGT
TCGCTGCTCG GTCTCGCGGT CACGATCCCG CTGATCACGG GCTTCGATTC GAGCACGGCT
GCGCTGCAGT TCGTCGAGAA GTCGACCTGG ATCGAACGCT TCGACATCGC GTACCACCTC
GGCGTCGACG GCATTTCGAT GTGGTTCGTC GTGCTGACCG CGCTGATCAC GGTGATCGTC
GTGATCGCCG CGTGGGAAGT GATCACCGAG AACGTCGCGC AGTACCTCGC GGCCTTCCTG
ATCCTGTCCG GGATCATGAT CGGCGTGTTC TCGGCGGCCG ACGGCCTGCT GTTCTACGTG
TTCTTCGAGG CGACCCTGAT CCCGATGTAC ATCATCATCG GCGTGTGGGG CGGCCCGAAC
CGCGTGTATG CGGCATTCAA GTTCTTCCTG TACACGCTGG CCGGCTCGCT GCTGATGCTG
GTCGCGCTGA TCTACCTGTA CACGCAGACG CATTCGTTCG ACCTCGCGAC GTGGCAGAAC
GCCAAGATCG CGATGACGCC GCAGATCCTG TTGTTCATTG CATTCTTCCT CGCGTTCGCG
GTGAAGGTGC CGATGTGGCC GGTGCATACC TGGCTGCCGG ACGCGCACGT GGAAGCGCCG
ACGGGCGGCT CTGTCGTGCT GGCGGCGATC ATGCTGAAGC TCGGCGCGTA CGGTTTCCTG
CGTTTCTCGC TGCCGATCAC GCCTGACGCA AGCCACTTCC TCGCACCGGT CGTGATCACG
CTGTCGCTGA TCGCGGTGAT CTACATCGGC CTCGTCGCGA TGGTGCAGGC CGACATGAAG
AAGCTGGTCG CGTATTCGTC GATCGCGCAC ATGGGCTTCG TGACGCTCGG CTTCTTCATC
TTCAACCAGC TCGGCGTCGA AGGCGCGATC ATCCAGATGA TCTCGCACGG CTTCGTGTCG
GGTGCGATGT TCCTGTGCAT CGGCGTGCTG TACGACCGTT TGCACTCGCG CCAGATCGCC
GACTACGGCG GCGTCGTGAA CGTGATGCCG AAGTTCGCGG CATTCGCGAT GCTGTTCTCG
ATGGCCAACT GCGGCCTGCC GGGCACGTCG GGTTTCGTCG GCGAGTTCAT GGTGATTCTC
GCCGCCGTCC AGTACAACTT CTGGATCGCA TTCGGCGCGG CATTCACGCT GATCCTCGGC
GCCGCCTACA CGCTGTGGAT GTACAAGCGC GTGTACTTCG GCGCGGTCGC GAATGATCAC
GTTGCCAAGC TGAAGGACAT CGGCCGTCGC GAATTCCTGA TGCTGGCCGT GCTGGCCGCG
TTCACGATGC TGATGGGCCT GTATCCGAAG CCTTTCACCG ACGTGATGCA CGTTTCCGTG
GAAAACCTCC TCTCCCATGT CGGGCAGTCC AAACTGCCGC TGGCCCAGTA A
|
|---|
| Protein sequence | MHAFPILSTA IWLPIVFGLL VLAVGNDKNP GTARWVALIG SLLGLAVTIP LITGFDSSTA
ALQFVEKSTW IERFDIAYHL GVDGISMWFV VLTALITVIV VIAAWEVITE NVAQYLAAFL
ILSGIMIGVF SAADGLLFYV FFEATLIPMY IIIGVWGGPN RVYAAFKFFL YTLAGSLLML
VALIYLYTQT HSFDLATWQN AKIAMTPQIL LFIAFFLAFA VKVPMWPVHT WLPDAHVEAP
TGGSVVLAAI MLKLGAYGFL RFSLPITPDA SHFLAPVVIT LSLIAVIYIG LVAMVQADMK
KLVAYSSIAH MGFVTLGFFI FNQLGVEGAI IQMISHGFVS GAMFLCIGVL YDRLHSRQIA
DYGGVVNVMP KFAAFAMLFS MANCGLPGTS GFVGEFMVIL AAVQYNFWIA FGAAFTLILG
AAYTLWMYKR VYFGAVANDH VAKLKDIGRR EFLMLAVLAA FTMLMGLYPK PFTDVMHVSV
ENLLSHVGQS KLPLAQ
|
|---|
| |