| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2145 |
|---|
| Symbol | |
|---|
| ID | 4311010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 2354762 |
|---|
| End bp | 2355616 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638149970 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | YP_774035 |
|---|
| Protein GI | 115352196 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.492888 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTGT GCGATTTCGA GGTCGGTCTC GACCAGCCTT TCTTCCTGAT CGCGGGTACC
TGCGTCGTCG AATCGGAGCA AATGACGATC GACACGGCGG GCCGCCTGAA GGAGATCTGC
GAGAAGCTGA ACGTGCCGTT CATCTACAAG TCGTCGTATG ACAAGGCGAA CCGCAGCTCG
GGCAAGTCGT TTCGCGGCCT CGGAATGGAC GAGGGCCTGC GGATCCTCGG CGAGGTGAAG
CGCCAGCTCG GCCTGCCGGT GCTGACCGAC GTGCATTCGA TCGACGAGAT CGAGCAGGTC
GCGTCGGTCG TCGACGTCCT CCAGACGCCC GCGTTCCTGT GCCGTCAGAC CGATTTCATC
CACGCGTGCG CGCGCTCGGG CAAGCCCGTC AACATCAAGA AGGGCCAGTT CCTCGCGCCG
CACGACATGA AGAACGTGAT CGACAAGGCG CGCGAAGCGG CGCGTGAAGC CGGTCTGTCG
GAAGACCGAT TCATGGCGTG CGAGCGCGGC GTCTCGTTCG GCTACAACAA CCTCGTGTCC
GACATGCGTT CGCTCGCGAT CATGCGCGAG ACGAGCGCGC CGGTCGTGTT CGACGCGACC
CACTCGGTGC AGCTGCCGGG CGGGCAGGGC ACGAGCTCGG GCGGCCAGCG CGAATTCGTG
CCGGTGCTCG CGCGTGCCGC GGTCGCGACG GGCGTCGCGG GCCTGTTCAT GGAAACGCAC
CCGAATCCGG CCGAAGCGAA GTCGGACGGC CCGAACGCGG TGCCGCTGAA CCGGATGGGC
GCGTTGCTGG AGACCCTCGT CACGCTCGAC CAGGCGGTGA AGCGCCATCC GTTCCTGGAA
AACGATTTCA ACTAA
|
|---|
| Protein sequence | MKLCDFEVGL DQPFFLIAGT CVVESEQMTI DTAGRLKEIC EKLNVPFIYK SSYDKANRSS
GKSFRGLGMD EGLRILGEVK RQLGLPVLTD VHSIDEIEQV ASVVDVLQTP AFLCRQTDFI
HACARSGKPV NIKKGQFLAP HDMKNVIDKA REAAREAGLS EDRFMACERG VSFGYNNLVS
DMRSLAIMRE TSAPVVFDAT HSVQLPGGQG TSSGGQREFV PVLARAAVAT GVAGLFMETH
PNPAEAKSDG PNAVPLNRMG ALLETLVTLD QAVKRHPFLE NDFN
|
|---|
| |