Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_2007 |
Symbol | |
ID | 4309049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 2202351 |
End bp | 2204801 |
Gene Length | 2451 bp |
Protein Length | 816 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638149824 |
Product | conjugal transfer ATPase TrbE |
Protein accession | YP_773897 |
Protein GI | 115352058 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.581672 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAACC TTGCCGAATA CCGCCAGCGC CCGGCCTTGC TCGCCGACTG GCTTCCGTGG GCCGGCTTGA TCGCGCCGGG CGTGGTGCTG AACAAGGATG GCAGTTTCCA GCGTACAGCG CGCTTTCGCG GGCCTGATCT GGACAGCGCC ACGCAAGGCG AACTGATCGC CACATCGGCG CGTCTCAACA ACGCGCTTCG CCGCCTGGGT TCGGGCTGGG CCCTGTTCAT TGAGGCCGAA CGCCGCCCGG CGGCGGACTA CCCGCATTCC GATTTCCCCG AGCCGCTGTC CTGGCTCGTG GACGAGGAAC GCCGCGCCGC CTTCGAGGAA TCGGGGCATC ACTTCGAGAG CGGCTATCAC CTGACGCTGG CGCACCTGCC GCCCGAGGAA TCACGCGCCC GCGCGGCCAA GCTGCTCTAC GAGAACGCGC CCGGCGATGG CGTGGATTGG CATGGCCGGC TCGATGCCTT CGTGGCGGAA ACCGATCGTG TTTTCGACTT GCTCGATGGC GTGATGCCGG AGATCGCCCG GCTCGATGAC GCCCAGACGC TGACCTACCT GCACGCCACG GTGTCCACGC GGCGCTACCG CGTGGGCGTA CCTGAAGTGC CGTTCCATAT CGACGCGCTG CTGGCCGACT CCGCGCTGGT CGGCGGCCTG GCGCCCACGC TGGGCGACCA GCACCTGCGC GTGGTGTCGG TGCGGGGCTT TCCGACCTCG ACCTGGCCGG GCCTGCTGGA CGACCTCAAC CGCCTGGGCT TTGCCTATCG CTGGAGCACG CGCTTTCTCT GCCTGGACAA AGCCGAAGCA GAAAAGGAAC TCGGCCGCCT GCGCCGCCAG TGGTTTGCCA AGCGCAAGAA CGTCGTCGCG CTGCTGCGCG AAACCATCTT CCAGCAGGAA AGCCCGCTGG TCGATACCGA CGCGAGCAAC AAGGCGGCCG ACGCGGATGC CGCGATGCAG GAGCTGGGTG GCGATCAGGT CGCCTTCGGT TACTTCACTG CCACGGTGAC GGTGCTCGAT GCCGATTCAG CCGCGGCCGA CGAAAAGCTG CGCATGGTGG AGCGCGTCAT CCAGGGCCGG GGTTTCGTGA CCATCCCCGA GACGTTGAAT GTCGTGGATG CGTGGCTGTC GTCCATCCCC GGCAATGCCT ACGCGAATGT CCGCCAGCCC ATCGTCTCGA CGCTGAACTT GGCGCACATG ATGCCGCTGT CTGCGGTGTG GGCCGGGCCG GAGAAGAACG ACCACCTCGA CGGCCCGCCG CTGATCGTCA CCCGCACCGA TGGTGCGACG CCGTTCCGGC TGGTGACACA CATCGGCGAC GTCGGCCACA CGCTGGTCGC CGGGCCGACC GGCATGGGCA AGTCGGTGTT GCTTGCCATT CTGGTGCAGC AATTCCGCCG CTATCGCGGC TCTCGCGTGT TCGCTTTCGA TATGGGCCGC TCGATGCGCG CCACCATCCT GGGCCTGGGC GGCGAGCACT ACGACCTGGG TGCCGATGGC GGCATTGCCT TCCAGCCGCT CGCGCGTATC GACCGGGAAA GCTATCGCTC CTGGGCGGGG GAATGGGTGG AAGGCCGCCT GCTGCATGAG GGCGTGACGG TCGGCCCGGA CGAGAAGGCG GTCATCTGGT CGGCGCTGGG CAGCTTGACC GGTGCGCCGG TCGAGCAACG CACGTTGACC GGGTTATCAG TACTGCTGCA ATCGAACGCG CTACGGCAGG CACTCGCGCC TTATGTGCTC GGTGGCGCGC ACGGCAAGCT ACTGGACGCG GACACCGATC GTCTCGGCTT CGGTGACGTA CAGGGCTTCG AGATGGAAGA ACTGATGCAC AGCCCCGCCG CCGTGCAAGC GGTGCTGCGC TACCTGTTCG CCCGCTTCGA TGAGCGTTTC GACGGTGCGC CCACGCTGCT GATTCTGGAT GAGGCGTGGC TGTTCCTCGA TGAGCCGTCT TTCGCCGCGC GCATTCGCCA ATGGTTGAAG ACGCTGCGCA AGAAAAACGT GTCGGTGATC TTCGCCACGC AGTCGCTCGC CGATATCAAG GATTCGAGCA TTGCGCCCGC GATCATCGAG AGCTGCCCGA GTCGGATTTT TCTCCCCAAT CCGCAGGCCA CCGAGCCGCA GATTCGCACG ATCTACGAGG GCTTCGGCCT CAACAGCCGG CAAATCGAAA TCGTCGCTAC CGCCCAGCCC AAGCGCGACT ACTACTACCA ATCGCGCCTC GGCAATCGCC TGTTCGACCT TGATCTGGGT CCAGCCGCAC TCGCCTTCGC GGGTGCATCT ACTCCGCAAG ACCAACGCGA CATGGATCGC GTGCTGACGC AGGCCGGCGC TCCCGGCTTC GCCGGTGCGT GGCTGCGCCA TCGCGGCCTC GACTGGGCCT CCGACCTGTT GCCGTCCTCA CCGGCGGCCG CTTCGTTCCT CAACTCCCAA CCACTGGAGG TTTCGCCATG A
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Protein sequence | MLNLAEYRQR PALLADWLPW AGLIAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA RLNNALRRLG SGWALFIEAE RRPAADYPHS DFPEPLSWLV DEERRAAFEE SGHHFESGYH LTLAHLPPEE SRARAAKLLY ENAPGDGVDW HGRLDAFVAE TDRVFDLLDG VMPEIARLDD AQTLTYLHAT VSTRRYRVGV PEVPFHIDAL LADSALVGGL APTLGDQHLR VVSVRGFPTS TWPGLLDDLN RLGFAYRWST RFLCLDKAEA EKELGRLRRQ WFAKRKNVVA LLRETIFQQE SPLVDTDASN KAADADAAMQ ELGGDQVAFG YFTATVTVLD ADSAAADEKL RMVERVIQGR GFVTIPETLN VVDAWLSSIP GNAYANVRQP IVSTLNLAHM MPLSAVWAGP EKNDHLDGPP LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAI LVQQFRRYRG SRVFAFDMGR SMRATILGLG GEHYDLGADG GIAFQPLARI DRESYRSWAG EWVEGRLLHE GVTVGPDEKA VIWSALGSLT GAPVEQRTLT GLSVLLQSNA LRQALAPYVL GGAHGKLLDA DTDRLGFGDV QGFEMEELMH SPAAVQAVLR YLFARFDERF DGAPTLLILD EAWLFLDEPS FAARIRQWLK TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCPSRIFLPN PQATEPQIRT IYEGFGLNSR QIEIVATAQP KRDYYYQSRL GNRLFDLDLG PAALAFAGAS TPQDQRDMDR VLTQAGAPGF AGAWLRHRGL DWASDLLPSS PAAASFLNSQ PLEVSP
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