| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1839 |
|---|
| Symbol | |
|---|
| ID | 4310060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2024037 |
|---|
| End bp | 2025281 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638149653 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_773729 |
|---|
| Protein GI | 115351890 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCACTTA CCGACATCAA GATCCGACAA GCGAAGGCAG GCAACAAGCC TACCAAACTT
ACCGACGGCA ATGGACTGTA TCTGTTGGTG AAGCCGTCCG GCTCCAAGCT TTGGCGATAC
AAGTACCGAA TTGCCGGGAA GGAAAATGTC TTCGCGATCG GCGAGTATCC CACCACCAGC
CTTCAAGCCG CGCGCGTAGC ACGCGACGAT GCGCGTGAGC TTGTCAAAAA GGGGCTACAC
CCATCCCATG CACGACAGGA GGTCCTGTCT GCGCGCATTA ACGAAGGCAA AGCCACTTTT
CGTGCCGTCA GCGACGAGTG GCTGGAGAAG AAGCGCAAGA CGTGGACGGA GCGGCACTTC
GGCGAGATTC TGCGCATGCT CGAAGCAGAC GCATACCCGT ACATCGGGAA CCGCCCGATG
CGCTCTATTA CCGCCCACGA TGTGCTTGCG CTGATGCGCC GGGTCGAAAA GCGCGGCTCC
CCTTCCGTAG CGATCAAACT ACGTCAGTAC GTGTCCAACG TGTTCCAGTA CGCGGTGATC
ACGCTTCGGG CCGATACCGA TCCAGCCTCG GTGTTGCGCG GAGCAGTTCT CAAGCCGCCG
ACCGAGCATG CTCGGCCGCT AAGCCGTGAA GAACTGAAGG CGCTGTTTCG GCAATTGCCC
CTGTACAAGA GCAAGAGAAC CACGATTGCG ATCCGCCTGC TGATGATGCT GTTTCCGAGA
ACGGTTGAGC TTTGTCGAGC GCGCTGGGAG GAAATCGATC TGGCCGCCGC TGAGTGGCGA
GTCCCGCCGG AGAAGATCAA ATCGCGACGG CTGCACATCG TTCCGCTTCC CACGCAGGCG
ATCAGTCTGC TGCGCGAGTT GCAGGAGATC CACGGCAATC GCGGATATAT CCTGCCGATC
CTTCATAGCA ATCGAAAACG GCCCCACATG AGTCGAGCAA CAATCAATCG GGCGCTCGAC
TCCATGATGC CGAACAACCC CGAACCGATA ACGGGCCATG ACTTCCGAGC AACCGCGTCG
ACGAACCTCC ACGAGATGGG CTGGAAGGAT GAAGTCGTTG AAATGCAGCT ATCGCACAAG
GACAAAGACA GAACCCGCTC AACGTACAAT CACGCAAAGT ATCTTCCAGA GCGACGAGAA
ATGATGCAGT CATGGGCCGA TTGGCTCAGC GACGTCGAGA ATGACGCGCT CACCGACGCG
TCGGCGGCAA GCACCGTCAC GCCTGACCAA CGACGTGAAG AATGA
|
|---|
| Protein sequence | MPLTDIKIRQ AKAGNKPTKL TDGNGLYLLV KPSGSKLWRY KYRIAGKENV FAIGEYPTTS
LQAARVARDD ARELVKKGLH PSHARQEVLS ARINEGKATF RAVSDEWLEK KRKTWTERHF
GEILRMLEAD AYPYIGNRPM RSITAHDVLA LMRRVEKRGS PSVAIKLRQY VSNVFQYAVI
TLRADTDPAS VLRGAVLKPP TEHARPLSRE ELKALFRQLP LYKSKRTTIA IRLLMMLFPR
TVELCRARWE EIDLAAAEWR VPPEKIKSRR LHIVPLPTQA ISLLRELQEI HGNRGYILPI
LHSNRKRPHM SRATINRALD SMMPNNPEPI TGHDFRATAS TNLHEMGWKD EVVEMQLSHK
DKDRTRSTYN HAKYLPERRE MMQSWADWLS DVENDALTDA SAASTVTPDQ RREE
|
|---|
| |