Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1780 |
Symbol | |
ID | 4311118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 1967755 |
End bp | 1969686 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 638149594 |
Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
Protein accession | YP_773670 |
Protein GI | 115351831 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCTATG CCGTCCCCCA GGCCCAGCAC GCCGACCGTG TGCTCGGCGC GCTCGCCGGG CGCCTGCCCG CACCGGCCGA TTCCGCGCGT CTCGTGTCGT CGTGGCAGCG CTCGCTCGAG CGCTACGCGC TCGACCCCGC GTCGTCGATC GGCCCGCGCG TGCTGACCGC GGCCGAGCTG CGCGAGGTGC GCGACAAGGA GGAGGCGTTC CTGCGCGCCT CGGGCCAGTG CCTGACGCGC CTGCACGAGA TGATTCGGGT CGCCGACTAT TGCGTGATGC TGACCGACGC GCATGGCGTG ACGATCGACT ACCGGATCGA CCGGGAGCGC CGCAACGACT TCCGCCATGC GGGGCTGCAC ATCGGCTCGT GCTGGTCGGA AAGCGAGGAA GGCACGTGCG GCGTCGCGAG CGTGCTGACC GATCTCGCGC CGATCACCGT ACACAAGACC GACCACTTCC GCGCGGCGTT CACCACGCTC ACCTGCAGCG CAGCGCCGAT CTTCTCGCCG GGCGGCGAAC TGATCGGCGT GCTCGACGCG TCGGCCGTCC AGTCGCCCGA CGGCCGCGAC AGCCAGCGCC TCGTGTACCA GCTCGTGCGG CAGAGCGCGG CGCTGATCGA GGACGGCTAT TTCGTGCACA GCACCGCGCA GCACTGGATA TTGTTCGGGC ATCCGAACCG TCACTACGTC GAGGCACAGC CCGAATGGCT GATCGCGTTC GACGAATGCG GCAATATCGT CGCCGCGAAC CGGCACGCGC GCGACGCGCT GCCGGCGCTG CGCGAACCGC GCCATATCGA CGAGATCTTC GATGCGACCG AGATGCCGCT GCGCGACGCC GCGCGGCTCG ATGCGATCGT CGCGCTGCGG CTGCGCGCGA CCGGCGCGCC GCTCTATGCG CGACTGCGTG CCCCGTTACG GCGTGCGGGC CGCGAAACCG GCACGGCACG GGCCGCCCCG GCCTCCCGCC GACCCGGCAC CGCGCAGCGC CACGTCGGCG CGCTGACACC GTTCCTGCAC AGCAGCGACA CGCGCGTCGC GCAGCAGGCC GAACTCGCGC TGCGGGTCGC AAGCAAGCGG CTGCCGATCC TCGTGCTCGG CGAAACCGGC GCGGGAAAGG AAGTGTTCGC CCGCGCGATC CACGACGCCG GCGCGCGGCG TGCGCGGCCG TTCGTCGCGG TCAACTGCGG CGCACTGCCC GAGACACTGA TCGAAAGCGA GCTGTTCGGC TACGCGGCCG GTGCGTTCAC CGGCGCGCGC AAGCACGGCG CGCGCGGCAA GATCGCGCTC GCCGACGGCG GCACGCTGTT CCTCGACGAA ATCGGCGACA TGCCGCTCAC GTTGCAAACG CGCCTGCTGC GCGTGCTCGC CGACGGCGAA GTCGTGCCGC TCGGCAGCGA CACACCCGTG CGCGTGGATC TCGACGTGAT CTGCGCGACC CACCGCGATC TCGCGCGGAT GGTGGCCGAC GGCACGTTCC GCGAGGACCT GTATTACCGG TTGAGCGGCG CGACGTTCGA GCTGCCGCCG CTGCGCGAGC GCGCGGACGT GGGCGACGTG ATCGCCACCG TGTTCGCCGA GGAGGCGCAG GCGACCGGCC ACGTGCTCAC GCTCGACCCG ACGCTCGCCG CGCAGCTCGC CGCGTATCCG TGGCCCGGCA ACGTGCGCCA GCTGCGCAAC GTGCTGCGCT ATGCGTGCGC GGTATGCGAC GCCGCGTGCG TGACGCGGCG CGACCTGCCG GCCGATCTCG CCGCGCAGCT CGGTGCCGGT CCGGCCGGCG CACTGCCGGA CGACGAACGC GGCCGCATCG TCGCGGCACT CACCGCGCAT CGCTGGCGGC CCGATGCGGC CGCGAAGGCG CTCGGCATCT CGCGCGCGAC GCTGTACCGG CGAATCGCCA AGCACCGGAT CGTCGCGCCG CACCGCATCT GA
|
Protein sequence | MPYAVPQAQH ADRVLGALAG RLPAPADSAR LVSSWQRSLE RYALDPASSI GPRVLTAAEL REVRDKEEAF LRASGQCLTR LHEMIRVADY CVMLTDAHGV TIDYRIDRER RNDFRHAGLH IGSCWSESEE GTCGVASVLT DLAPITVHKT DHFRAAFTTL TCSAAPIFSP GGELIGVLDA SAVQSPDGRD SQRLVYQLVR QSAALIEDGY FVHSTAQHWI LFGHPNRHYV EAQPEWLIAF DECGNIVAAN RHARDALPAL REPRHIDEIF DATEMPLRDA ARLDAIVALR LRATGAPLYA RLRAPLRRAG RETGTARAAP ASRRPGTAQR HVGALTPFLH SSDTRVAQQA ELALRVASKR LPILVLGETG AGKEVFARAI HDAGARRARP FVAVNCGALP ETLIESELFG YAAGAFTGAR KHGARGKIAL ADGGTLFLDE IGDMPLTLQT RLLRVLADGE VVPLGSDTPV RVDLDVICAT HRDLARMVAD GTFREDLYYR LSGATFELPP LRERADVGDV IATVFAEEAQ ATGHVLTLDP TLAAQLAAYP WPGNVRQLRN VLRYACAVCD AACVTRRDLP ADLAAQLGAG PAGALPDDER GRIVAALTAH RWRPDAAAKA LGISRATLYR RIAKHRIVAP HRI
|
| |