Gene Bamb_1780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1780 
Symbol 
ID4311118 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp1967755 
End bp1969686 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content72% 
IMG OID638149594 
ProductFis family GAF modulated sigma54 specific transcriptional regulator 
Protein accessionYP_773670 
Protein GI115351831 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCTATG CCGTCCCCCA GGCCCAGCAC GCCGACCGTG TGCTCGGCGC GCTCGCCGGG 
CGCCTGCCCG CACCGGCCGA TTCCGCGCGT CTCGTGTCGT CGTGGCAGCG CTCGCTCGAG
CGCTACGCGC TCGACCCCGC GTCGTCGATC GGCCCGCGCG TGCTGACCGC GGCCGAGCTG
CGCGAGGTGC GCGACAAGGA GGAGGCGTTC CTGCGCGCCT CGGGCCAGTG CCTGACGCGC
CTGCACGAGA TGATTCGGGT CGCCGACTAT TGCGTGATGC TGACCGACGC GCATGGCGTG
ACGATCGACT ACCGGATCGA CCGGGAGCGC CGCAACGACT TCCGCCATGC GGGGCTGCAC
ATCGGCTCGT GCTGGTCGGA AAGCGAGGAA GGCACGTGCG GCGTCGCGAG CGTGCTGACC
GATCTCGCGC CGATCACCGT ACACAAGACC GACCACTTCC GCGCGGCGTT CACCACGCTC
ACCTGCAGCG CAGCGCCGAT CTTCTCGCCG GGCGGCGAAC TGATCGGCGT GCTCGACGCG
TCGGCCGTCC AGTCGCCCGA CGGCCGCGAC AGCCAGCGCC TCGTGTACCA GCTCGTGCGG
CAGAGCGCGG CGCTGATCGA GGACGGCTAT TTCGTGCACA GCACCGCGCA GCACTGGATA
TTGTTCGGGC ATCCGAACCG TCACTACGTC GAGGCACAGC CCGAATGGCT GATCGCGTTC
GACGAATGCG GCAATATCGT CGCCGCGAAC CGGCACGCGC GCGACGCGCT GCCGGCGCTG
CGCGAACCGC GCCATATCGA CGAGATCTTC GATGCGACCG AGATGCCGCT GCGCGACGCC
GCGCGGCTCG ATGCGATCGT CGCGCTGCGG CTGCGCGCGA CCGGCGCGCC GCTCTATGCG
CGACTGCGTG CCCCGTTACG GCGTGCGGGC CGCGAAACCG GCACGGCACG GGCCGCCCCG
GCCTCCCGCC GACCCGGCAC CGCGCAGCGC CACGTCGGCG CGCTGACACC GTTCCTGCAC
AGCAGCGACA CGCGCGTCGC GCAGCAGGCC GAACTCGCGC TGCGGGTCGC AAGCAAGCGG
CTGCCGATCC TCGTGCTCGG CGAAACCGGC GCGGGAAAGG AAGTGTTCGC CCGCGCGATC
CACGACGCCG GCGCGCGGCG TGCGCGGCCG TTCGTCGCGG TCAACTGCGG CGCACTGCCC
GAGACACTGA TCGAAAGCGA GCTGTTCGGC TACGCGGCCG GTGCGTTCAC CGGCGCGCGC
AAGCACGGCG CGCGCGGCAA GATCGCGCTC GCCGACGGCG GCACGCTGTT CCTCGACGAA
ATCGGCGACA TGCCGCTCAC GTTGCAAACG CGCCTGCTGC GCGTGCTCGC CGACGGCGAA
GTCGTGCCGC TCGGCAGCGA CACACCCGTG CGCGTGGATC TCGACGTGAT CTGCGCGACC
CACCGCGATC TCGCGCGGAT GGTGGCCGAC GGCACGTTCC GCGAGGACCT GTATTACCGG
TTGAGCGGCG CGACGTTCGA GCTGCCGCCG CTGCGCGAGC GCGCGGACGT GGGCGACGTG
ATCGCCACCG TGTTCGCCGA GGAGGCGCAG GCGACCGGCC ACGTGCTCAC GCTCGACCCG
ACGCTCGCCG CGCAGCTCGC CGCGTATCCG TGGCCCGGCA ACGTGCGCCA GCTGCGCAAC
GTGCTGCGCT ATGCGTGCGC GGTATGCGAC GCCGCGTGCG TGACGCGGCG CGACCTGCCG
GCCGATCTCG CCGCGCAGCT CGGTGCCGGT CCGGCCGGCG CACTGCCGGA CGACGAACGC
GGCCGCATCG TCGCGGCACT CACCGCGCAT CGCTGGCGGC CCGATGCGGC CGCGAAGGCG
CTCGGCATCT CGCGCGCGAC GCTGTACCGG CGAATCGCCA AGCACCGGAT CGTCGCGCCG
CACCGCATCT GA
 
Protein sequence
MPYAVPQAQH ADRVLGALAG RLPAPADSAR LVSSWQRSLE RYALDPASSI GPRVLTAAEL 
REVRDKEEAF LRASGQCLTR LHEMIRVADY CVMLTDAHGV TIDYRIDRER RNDFRHAGLH
IGSCWSESEE GTCGVASVLT DLAPITVHKT DHFRAAFTTL TCSAAPIFSP GGELIGVLDA
SAVQSPDGRD SQRLVYQLVR QSAALIEDGY FVHSTAQHWI LFGHPNRHYV EAQPEWLIAF
DECGNIVAAN RHARDALPAL REPRHIDEIF DATEMPLRDA ARLDAIVALR LRATGAPLYA
RLRAPLRRAG RETGTARAAP ASRRPGTAQR HVGALTPFLH SSDTRVAQQA ELALRVASKR
LPILVLGETG AGKEVFARAI HDAGARRARP FVAVNCGALP ETLIESELFG YAAGAFTGAR
KHGARGKIAL ADGGTLFLDE IGDMPLTLQT RLLRVLADGE VVPLGSDTPV RVDLDVICAT
HRDLARMVAD GTFREDLYYR LSGATFELPP LRERADVGDV IATVFAEEAQ ATGHVLTLDP
TLAAQLAAYP WPGNVRQLRN VLRYACAVCD AACVTRRDLP ADLAAQLGAG PAGALPDDER
GRIVAALTAH RWRPDAAAKA LGISRATLYR RIAKHRIVAP HRI