| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1755 |
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| Symbol | rumA |
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| ID | 4309837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | - |
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| Start bp | 1940749 |
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| End bp | 1942203 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638149569 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_773645 |
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| Protein GI | 115351806 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGGCTG GCGTCGTCTA CAATCTCGCC TTCTTCAACG TTTGTCAGGA AAAGCTGGTG
TCCGAAGCCG TCCCCACTTC TGCGCGCAAA TCGAAAAATG CGCCCGTCGC GCCCGGGCCC
GCCCCGGTTC TCGAGATCGA ATCGCTCGAC ATGGAAGCGC GCGGTGTCGG CCGCACGGTG
ACCGAGGACG GCACGCCGGG CAAGGTCATC TTCGTCGAAG GCGCGCTGCC CGGCGAGCGT
GTGACCTATT CGAGCTACCG TCGCAAGCCG AGCTACGAGC AGGCGACCGT GGTCGACATC
CTGCGCCCGA GCGTGCTGCG CACGCAGCCG AAATGCGCGT TCTTCGGCAC CTGCGGCGGC
TGCTCGATGC AGCACCTCGA CATGCGCGCG CAAGTGGCGA TCAAGCAGCG CGTGCTCGAG
GACAACCTGT GGCACCTGGC GAAGCTGCGC GCCGAGACGG TGTTCGCGCC GATCCATGGC
CCGTCGTGGG GCTACCGCTA CCGTGCGCGC CTGACCGTGC GCAACGTCGC GAAGAAGGGC
GGCGTGCTGG TCGGCTTCCA CGAAAAGAAG AGCAGCTATG TCGCCGACAT GACGAGCTGC
GAAGTGCTGC CGCCGCACGT GTCGGCAATG CTCGTGCCGC TGCGCCGGCT GGTCGAGGGG
CTGTCGATTC GCGATCGCAT GCCGCAGATC GAACTCGCGG TCGGTTCGCA AGTCACGGCG
CTGGTGCTGC GCGTGCTGGA GCCGATCAAT GCGGACGACG AAGCGCTGCT GCGCGCGTTC
GCGGACGAGC ACAAGGTGCA GTTCTGGCTG CAGCCGAAGG GCCCGGACAC GGTGACGCCG
TTCTATCCGC TCGACGTGCC GCTCGACTAC ACGCTGCCGG AGTTCGGCAT CCGCATGCCG
TTCAAGCCGA CCGACTTCAC GCAGGTCAAC CATCAGATCA ACCGCGTGCT GGTGGGCCGT
GCGCTGCGCC TGCTCGCGCC GTCGCGCGAC GATCGCGTGC TCGACCTGTT CTGCGGGATC
GGCAACTTCA CGCTGCCGCT CGCGCGACTG TCGCGCGAGG TGATGGGCAT CGAAGGCAGC
GACACGCTGA CGACGCGCGC GCTGGCGAAT GCGCGCGAAA ACGGCGTCGA TGGGCACACG
ACGTTCGCGT GCCGGAACCT GTTCGAAGTG ACGGGCGACG ATCTCCGTGC GCTCGGCGCG
TTCGACAAGT TCCTGATCGA CCCGCCGCGC GAAGGCGCGC TCGCGGTGTC GAAGGCGCTG
GCCGAAATCG CGCAGAGCGG CGAAGGCCCG CTGCCGAAGC GGATCGTCTA CGTGTCGTGT
AACCCGTCGA CGCTCGCGCG CGACGCGGGC CTCCTCGTAC ACGAGGCGGG TTACCGCCTG
AAGGGCGCCG GGGTCGTGAA CATGTTCCCG AATACGTCGC ACGTCGAATC GATCGCGCTG
TTCGAGCGCG GCTGA
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| Protein sequence | MRAGVVYNLA FFNVCQEKLV SEAVPTSARK SKNAPVAPGP APVLEIESLD MEARGVGRTV
TEDGTPGKVI FVEGALPGER VTYSSYRRKP SYEQATVVDI LRPSVLRTQP KCAFFGTCGG
CSMQHLDMRA QVAIKQRVLE DNLWHLAKLR AETVFAPIHG PSWGYRYRAR LTVRNVAKKG
GVLVGFHEKK SSYVADMTSC EVLPPHVSAM LVPLRRLVEG LSIRDRMPQI ELAVGSQVTA
LVLRVLEPIN ADDEALLRAF ADEHKVQFWL QPKGPDTVTP FYPLDVPLDY TLPEFGIRMP
FKPTDFTQVN HQINRVLVGR ALRLLAPSRD DRVLDLFCGI GNFTLPLARL SREVMGIEGS
DTLTTRALAN ARENGVDGHT TFACRNLFEV TGDDLRALGA FDKFLIDPPR EGALAVSKAL
AEIAQSGEGP LPKRIVYVSC NPSTLARDAG LLVHEAGYRL KGAGVVNMFP NTSHVESIAL
FERG
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