Gene Bamb_1680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1680 
Symbol 
ID4311001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand- 
Start bp1857543 
End bp1858208 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content64% 
IMG OID638149495 
ProductOmpW family protein 
Protein accessionYP_773571 
Protein GI115351732 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.163769 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATTCTT CAGGGGTCCG CACCATGCAT AAAACGATTC GAACTTGTGT CACCGCTGCC 
GCGATCACGG CGAGTCTCGC CGCGCTGCCT TCGCTGTCGC ACGCGGCTTC GCCGGGCGAC 
GGCATCAACC AGGGTGACGT ACTGGTCCGG CTGCGCGCGA TCAGCATCCA GCCGAACGAG 
CGCGCGAGCG ACACGCTGGG CGCGATCAAT ACCGGCGTGA ACAACGCGAT CGTGCCCGAG 
CTCGACTTCA CGTACATGAT CCGCGACTAC CTCGGCGTGG AACTGATCCT CGGCACGTCG 
CGGCACCAGA TGACGTCGAG TCTCGGCAAC CTCGGCGGCG TGGGCGTGCT GCCGCCGACG 
CTGCTGCTGC AGTACCACTT CAACCATGCC GGCAAGGTGC GCCCGTACGT CGGCGCGGGC 
CTGAACTATA CGTACTTCTA CAACAACGGG CTCAACGTCG GCGGCGAGGG CGTGTCGATC 
AACAAGAGCA GCTTCGGTCC GGCGCTGCAG TTCGGCGTCG ACGTGCAGCT CACGAAGAAG 
GTGTTCATGA ACGTCGACGT GAAGAAGATC TGGATGAGCA CCGACGCGAC GCTCGGCGAC 
AAGGGCATCG GCACGCTGCA CATCGATCCG CTGATCGTCG GCGTGGGCGT GGGGATGAAG 
TTCTAG
 
Protein sequence
MHSSGVRTMH KTIRTCVTAA AITASLAALP SLSHAASPGD GINQGDVLVR LRAISIQPNE 
RASDTLGAIN TGVNNAIVPE LDFTYMIRDY LGVELILGTS RHQMTSSLGN LGGVGVLPPT 
LLLQYHFNHA GKVRPYVGAG LNYTYFYNNG LNVGGEGVSI NKSSFGPALQ FGVDVQLTKK 
VFMNVDVKKI WMSTDATLGD KGIGTLHIDP LIVGVGVGMK F