Gene Bamb_1668 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1668 
Symbol 
ID4310989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp1843034 
End bp1844431 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content70% 
IMG OID638149483 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_773559 
Protein GI115351720 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.126097 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCCGC ACGACACCAT TCCGATCGTT CCCGCGCCGT CGCGCACCGT CATGCCCGAC 
GTGCGCGCGC TCGTCGCATA TCTGGAACAG GATCCTCAGC CGATGATCGT CCTCGATCCC
GACTACCGCA TCCTCGCGGC GAACGATGCG TACCGGCGCC AGTTCGGCGT GGCGGGCGTC
GAGCACGTCG GGCGGCACTG CTTCCAGGTG TCGCATCACT ACGACGTGCC GTGCGACCAG
GCCGGCGAGC ATTGCCCGAT GAAGCAGGCG CTCGAGTCGC GCAGCCTGAA CCGCGTGCTG
CACATTCACC ATACGCCGCG CGGCCCCGAG CACGTCGACG TGGAATTGCG GCCGATCTTC
GACGCGCGCG GCGACGTGAT CGCGTACGTC GAGCGGCTGA CGACGGTGCG CAGCGCGTCC
GCGCAGCCCA GCGCGGAAGG GCTCGTCGGC GGCGCCGACG CATTCAATGC GGCGCTCGGC
GCGCTGCAGC GCGTCGCACC GTCGATGCTG CCCGTGCTGC TGCTCGGTGA ATCGGGTACC
GGCAAGGAAT TGTTCGCGCG GGCGCTGCAC GAGGCGAGCG CGCGCGCGAT GGGGCCGTTC
GTGGTCGTCG ATTGTTCGGG CATCGCCGAG ACGCTGTTCG AGAGCGAACT GTTCGGCTAC
GAGAAGGGCG CGTTTACCGG CGCGAACCAG CGCAAGCCGG GCCTCGTCGA GACCGCGCAG
GGCGGCACGC TGTTTCTCGA TGAAATCGGC GACGTGCCGC TGCCGATGCA GGTGAAACTG
CTACGGCTGA TCGAGTCGGG GACGTTCCGG CGCGTCGGTG GCGTCGAGGC GCTGCGCGCG
GATTTCCGGC TCGTCGCGGC TACGCACAAG CCGCTGCGCG AGATGATCGA CGACGGCCGG
TTCCGGCAGG ACCTGTACTA CCGGATCAAC GCGTTTCCGA TTCCGCTGCC GGCGCTGCGC
GAACGGCAGG GCGACGTCGC GCTGCTGGCC GAATCGATCC TGCGGCGCAT CGCGAACGCG
CGCGGCAACG CGGGCGACGC GAGTGCGCGG CCGTTCGCGG CCCGGCCATT TGTGCTGACC
GAGCGCGCCC GCGCGTGCCT CGATGCGTAT GCATGGCCCG GCAACATCCG CGAGCTGCGC
AACGTGCTCG AACGCGCGTG CCTGTTCGCG GACGACGGCA CGATCCGGGT CGAGCACCTG
CCGGCCGAAC TCGTCGCGGC GGCAGCGGCG CCGCAGGAGC GTGACGCGGA CGCGCGCGGC
CTGTCGGACG CGGAGCTCGT GCGCATCGCG CGCACGTTCG ACGGCACGCG CAAGGCGCTG
GCCGAGCACG TCGGGATGAG CGAACGGACG CTGTACCGGC GGATGAAGGC GCTCGGCCTC
GGCTCGCGCG AGCGCTGA
 
Protein sequence
MNPHDTIPIV PAPSRTVMPD VRALVAYLEQ DPQPMIVLDP DYRILAANDA YRRQFGVAGV 
EHVGRHCFQV SHHYDVPCDQ AGEHCPMKQA LESRSLNRVL HIHHTPRGPE HVDVELRPIF
DARGDVIAYV ERLTTVRSAS AQPSAEGLVG GADAFNAALG ALQRVAPSML PVLLLGESGT
GKELFARALH EASARAMGPF VVVDCSGIAE TLFESELFGY EKGAFTGANQ RKPGLVETAQ
GGTLFLDEIG DVPLPMQVKL LRLIESGTFR RVGGVEALRA DFRLVAATHK PLREMIDDGR
FRQDLYYRIN AFPIPLPALR ERQGDVALLA ESILRRIANA RGNAGDASAR PFAARPFVLT
ERARACLDAY AWPGNIRELR NVLERACLFA DDGTIRVEHL PAELVAAAAA PQERDADARG
LSDAELVRIA RTFDGTRKAL AEHVGMSERT LYRRMKALGL GSRER