| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1597 |
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| Symbol | |
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| ID | 4309752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 1770857 |
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| End bp | 1773439 |
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| Gene Length | 2583 bp |
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| Protein Length | 860 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638149413 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_773489 |
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| Protein GI | 115351650 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.711633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACCACG AACATGCCGA TTTGCCGGCG ATTCTGATCA TCGATGACGA CGCGATGACG
CGGATGCTGG TCGTGGAAAC GCTGGAGCCC GACGGTTTCC GCGTCGAGGA AGCGACCGGG
CCGCAGGAAG GCATCGAAGC GTTCCTGCGT CATCGTCCCG CCGTCGTGCT GCTCGATGTC
GAGATGCCCG GCGGCGACGG CTTCGACTGT TGCCGCGCGC TGCGCGCGTT GCCGGAAGGC
CGCCGCGTGC CGATCGTGAT GCTCACCGGC AACGACGACG ACGCATCGAT CGCCAGCGCG
TTCGACGCCG GCGCGACCGA TTTCGTGTCG AAACCGATGC GATGGAAGCT GCTCGGCTAC
CGGATCCGGT ATCTGCTGCG CGCGGCCGCG GCGGTCGAAA AGCTGGCGAC CACCGAGGTC
AGCCTCACGC ATGCGCAAGC GCTCGCGCAT GTCGGCAACT GGGAATTCCA GGCGGGCCGC
ACGGACGGCT ACTGGTCGCC GGAGCTGTAC CGGATCCTCG GGCTCGACGC GGCGCACGCG
CCGCCGACGT TCGAGCGGCT GCTGCAGGCC GTGCCGGCCG ACGAACAGCC GTTGCTCGTG
CAGTCGTTCA CGAGCCTGCG CACCGAAGGC GTGCCGTTCT CGCTCGAGCA TCGGCTCGTT
CACGCGGACG GCACCGAGCG CTGCGTGCTG CATCAGGCGG AGTCGGGACG CGATCCGAAC
CACGCGATCA TCCTGCGCGG CATCGTGCAG GACATCACCG AGCGCAAGAT GCAGCAGGGC
CGCATCGAAT ACCTTGCCAA CCACGATGCG CTCACCGGCC TGCCCAATCG CAACCTGCTG
AGCGACCGGA TGGAGCAGGC GATGTCGCAG GCGCGCCGCA CCGGGCAGCT GGTCGCGGTG
ATGGTGCTCG ACCTGGACCG CTTCAAGCAC ATCAACGACA GCTTCGGCCA CTCGGTCGGA
GACGGGCTGC TGCGCGTCGT CGCCGCACGG CTGAAGCGCT CCGTGCGCGA CGGCGACACG
GTCGCGCGGC TCGGCGGCGA CGAGTTCGTC GTGATGCTGG TCAACCTGGC GACGCAAGCG
GACGCGGACG TGATCGCCCG CAAGATCCTC GACACCTTCA TCGAGCCGTT CACGCTCGAC
GAACACGACC TGCACGTGAC GACCAGCGTC GGCGTGAGCC TCTGTCCGAC CGACGGCACC
AACGCCGAAA CGCTGCTGAA AACGGCCGAC GCCGCGCTCT ATGCGGCGAA GGAACACGGG
CGCAACTGCT ACCGCTTCTA TACGCGCGAA CTGGGTGCGC GCGTCGAGGA GCAGACCATC
CTCGAGAACG CGCTGCATCA GGCCGTCGCC AACCACGAGC TCGAGCTGTA CTACCAGCCG
AAGGTCGATC TCAAGACCGG CCAGATCAGC GGCGTCGAGG CGCTGATTCG CTGGCGGCGG
CCGGGGATCG GCGTGATTCC GCCCGACCGC TTCATCCCGA TCGCCGAAGA CTGCGGGCTG
ATCTTGCCGA TCGGCGAGTG GGTGTTGCGC ACCGCGTGCA TGCAGGCCGT CGCATGGCGC
CGGGAAGGCC ATCCGCCGAT CCGGATCGCC GTCAACCTGT CGGCGCGCCA GTTCCGGCAG
CAGGACGTGG CCGCCATGGT GCGCACGACG CTCGAGGAGA CCGGCCTGGC GCCGGACTCG
CTCGAACTCG AACTCACCGA AAGCGTGCTG ATGCAGGACT GCAACGCGAT CGCGCACACG
CTGCGCGAAC TGAAGGCGCT CGGCGTCGTG CTGTCGCTCG ACGACTTCGG CACCGGCTAT
TCGAGCCTGT CGTACCTGAA GGACTTGCCG ATCGACGTCG TCAAGATCGA CCGGTCGTTC
CTCGACGACG TCACCACCAG CGCCGAAGGT GCTTCGCTGA CGCGCTCGAT CATCGCGATG
GCCGAATCGC TGCACATGGA GACGGTGGCC GAGGGCGTGG AGACCGAAGC GCAGCTGTCG
TTCCTGAACC GGCATCGCTG CCATGCGATG CAGGGCTACT ACTTCAGCCA TCCGGTCACC
GGCGATGAAA TCGCCGACAT GCTGTCCGCC GGCTCGCAGC TTCCCGAGCA CTGCCGGCAG
CGCGAATTGC TGCACCGGAC GCTGCTGCTG GTGGACGACG ACCGCGAGGT GCTGCGCAGG
CTCAGGCAGG CGCTCGGCCG CGACGGCTAC GAGATTCTCG ACACCACGGA TCCCGACGAA
GCGCTCGTCC TGCTCGCGCA GCATCGCGTC GGCGTGATCG TGTCGGATTT CCGGATGCCG
AGCCTGTCCG GCATCGACCT GCTGCAGCGG GTAAAGGCGC TGTACCCGGA CATCGTGCGT
ATCCTGCTGT CGGGCTACGG GGAAGGGGAG TCGCTCGCCG ACGCGGCCGG CAACGGCTCC
GTCCAGAAAT TGCTGATCAA GCCGTGGGAT GTCGCGCTGC TGCGCAAGCA TATTGCGGAG
TCGTTCCAGC GGTTCGAGCA CAGCTCGCTG CAGAGCCGGG TGGGGCTCGG CGCGGGCCAT
CTCGGCATTC ATCCGTCTCC GCTGAGGGCC GTCGACGTGG CGCAAGCGCC TGGGCGGACT
TGA
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| Protein sequence | MNHEHADLPA ILIIDDDAMT RMLVVETLEP DGFRVEEATG PQEGIEAFLR HRPAVVLLDV
EMPGGDGFDC CRALRALPEG RRVPIVMLTG NDDDASIASA FDAGATDFVS KPMRWKLLGY
RIRYLLRAAA AVEKLATTEV SLTHAQALAH VGNWEFQAGR TDGYWSPELY RILGLDAAHA
PPTFERLLQA VPADEQPLLV QSFTSLRTEG VPFSLEHRLV HADGTERCVL HQAESGRDPN
HAIILRGIVQ DITERKMQQG RIEYLANHDA LTGLPNRNLL SDRMEQAMSQ ARRTGQLVAV
MVLDLDRFKH INDSFGHSVG DGLLRVVAAR LKRSVRDGDT VARLGGDEFV VMLVNLATQA
DADVIARKIL DTFIEPFTLD EHDLHVTTSV GVSLCPTDGT NAETLLKTAD AALYAAKEHG
RNCYRFYTRE LGARVEEQTI LENALHQAVA NHELELYYQP KVDLKTGQIS GVEALIRWRR
PGIGVIPPDR FIPIAEDCGL ILPIGEWVLR TACMQAVAWR REGHPPIRIA VNLSARQFRQ
QDVAAMVRTT LEETGLAPDS LELELTESVL MQDCNAIAHT LRELKALGVV LSLDDFGTGY
SSLSYLKDLP IDVVKIDRSF LDDVTTSAEG ASLTRSIIAM AESLHMETVA EGVETEAQLS
FLNRHRCHAM QGYYFSHPVT GDEIADMLSA GSQLPEHCRQ RELLHRTLLL VDDDREVLRR
LRQALGRDGY EILDTTDPDE ALVLLAQHRV GVIVSDFRMP SLSGIDLLQR VKALYPDIVR
ILLSGYGEGE SLADAAGNGS VQKLLIKPWD VALLRKHIAE SFQRFEHSSL QSRVGLGAGH
LGIHPSPLRA VDVAQAPGRT
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