| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1410 |
|---|
| Symbol | |
|---|
| ID | 4311510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1553150 |
|---|
| End bp | 1555015 |
|---|
| Gene Length | 1866 bp |
|---|
| Protein Length | 621 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638149221 |
|---|
| Product | membrane protein |
|---|
| Protein accession | YP_773302 |
|---|
| Protein GI | 115351463 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4655] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGG CTCGCCATTC ATCGAATCGA GTGACCGGAC GGGGGCGCGC CGCGCCGCGG
CGACAGCGCG GCGCGGTCGT CGTCATGGCG TCCGTATGGA TACTGCTGGC GATGGTCATT
CTCGGTTCGG TCGACATCGG CAACGTCTTC CTGGCCCGCC GCGACATGCA GCGCGTCGCC
GATCTCGCGG CGCTGGCGGC GGTCCAGCGG CTGGACGATG CGTGTGCGAA CGTGACGAGC
GTGGCCACGA GCAACGCGTC GACGAACGGC TTTTCCGTCG GCGGCACCAC GACCCTGTCG
GCCGATTGCG GTTATTGGGC ACCGACTGCC ACCGGGACGT CGAGCAGTTT CTATTCGTCG
AAGACATCGG TTCCCATGCT CACCCAGCTG AATGCGGTCC GGGTCACGAT TTCCAAGTCG
ATGCCGTATT TCTTCTTCGG ACCGACGCGC ACCGTGATCG CCACGTCGAC CGCAAAGGCG
ACCAACATCG ACACGTTCTC GATCGGCGCG ACGCTGGCCG CCGTCGGTGG AGTCGGCTGC
TCGGGTGTGC CGACCGGCAA TCCCGGTCTG GTGAATGCGC TGCTGGGCGC GCTGCTGCAA
GGCCAGGGCG GTACGCCGCT GACGCTCAAT CTTGCGTCCT ATCAGGGCCT TGCCTGCGCG
AACGTCAAGC TGGGTGATAT CGCCGTCGCA CTGCAGTCGC TGTCGGTGGG CAACGGGACG
ATGGGCGGGC TGGTGAATGC GCAGGCATCG GTCGGCACGC TGCTCAAGGC GACGGTGGCG
GCAGTCGGGA AGACGACCAC CCTCGGCACC GCTCTGCAGT CGAGTGCTAC CGGCGCACTG
AACAACATCC TCAACCTGAG CCTGCTCAGC AATACCAGCA TCAACGTCGC GCGCCTGACC
GGACAGGGTG CCACGTCGCT GCTCACGCTC GGCCTCGCGA ATGCGGAGGC GGCGGCCGAT
GCGACCGTGA ACGTGCTCGA TCTCGTGATG GCGATGGCGC AGATCTCGCA GAGCGGCAAG
CCGGGCGTCG TAATCGGCGC GAATGTGCCG CTTGCGCTGC CGAACGGCAC TTCCGTATCG
ATCGCGCAGT TGCAGGTGCA GGTCATCAGC CCGCCGACCA TCGCGGTGGG CGAAGGCGGG
AAGGACGCGA CCGGCGCGTG GCGCACGGTC GCGACGAATG CGCAGATCGG CGTCTATCTC
CTCGTCGACC TCGGTGTGAA TCCGCTGCCG GTCGTGGCGT CCGCGAACGT GTATCTGCCG
CTTTACGTGC AGCTCGGCGC GGGCAGCGCA ACGCTGTTGT CGACCAATTG CCGGACCTCG
CCGAATTCGG CCACGATCAG CGCGCAACCG AGCGTCGCGA ATCTATGTAT CGGCCAGCCG
CCGCTCAGCG GCAACCTGCT CAACCTGCCG GCGACCTACA GCTGCTCGAC GCCCGCCACG
GTGCTAGACG TGAAGGTACT GGCGGGCGCG GTCGAGGTGT CCGCGACCGT CTCCAATGTG
TCGGTGGCGC TGGCCGGCAA CACGGCGACC AATACGTTTT ACGGGCGGGG CGGAAGCGAT
CCGTCCTACT ACTGGACCAC CAACACGAAT GCGCTGGGTT CAGCCGTGAG CAATGCATTG
GCGGGCCTGA GCTCGGCCAC GATCACACCG AAAGTGGAGC TGCTGTTCGG ATTCGTCACC
GTCCCGCTCA CAGCGGATTT TGTTCCGAAA CTGCTAGGGG TCCTGACCGG TGTTTTGAGC
CCGCTGTTGA GCGCGCTGGA CGGTATCATC GATCCACTGC TCGATCTGCT TGGCGTCCAG
CTCGGTGCCG CCACGGTACA TCAGATGTCG CTGACCTGCG GCGCTGCGCA AACTGTCAGT
AATTAG
|
|---|
| Protein sequence | MIAARHSSNR VTGRGRAAPR RQRGAVVVMA SVWILLAMVI LGSVDIGNVF LARRDMQRVA
DLAALAAVQR LDDACANVTS VATSNASTNG FSVGGTTTLS ADCGYWAPTA TGTSSSFYSS
KTSVPMLTQL NAVRVTISKS MPYFFFGPTR TVIATSTAKA TNIDTFSIGA TLAAVGGVGC
SGVPTGNPGL VNALLGALLQ GQGGTPLTLN LASYQGLACA NVKLGDIAVA LQSLSVGNGT
MGGLVNAQAS VGTLLKATVA AVGKTTTLGT ALQSSATGAL NNILNLSLLS NTSINVARLT
GQGATSLLTL GLANAEAAAD ATVNVLDLVM AMAQISQSGK PGVVIGANVP LALPNGTSVS
IAQLQVQVIS PPTIAVGEGG KDATGAWRTV ATNAQIGVYL LVDLGVNPLP VVASANVYLP
LYVQLGAGSA TLLSTNCRTS PNSATISAQP SVANLCIGQP PLSGNLLNLP ATYSCSTPAT
VLDVKVLAGA VEVSATVSNV SVALAGNTAT NTFYGRGGSD PSYYWTTNTN ALGSAVSNAL
AGLSSATITP KVELLFGFVT VPLTADFVPK LLGVLTGVLS PLLSALDGII DPLLDLLGVQ
LGAATVHQMS LTCGAAQTVS N
|
|---|
| |