| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1405 |
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| Symbol | |
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| ID | 4309629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 1548527 |
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| End bp | 1549891 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638149216 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_773297 |
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| Protein GI | 115351458 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACACG ACATTCAATT TGCGGACGGC GCCGCGCCGT TCTCCCAGTC GCAGCAGTTC
CATGACATCA AGAATGCCGC GCACGAACAT TTGCTGACGC GCATCGAGGA ACTGGGGGCC
GAGTTCGGTC GTTGGTCGCG CCAGGCAATC AACCAGTTCG TCGACCTGGA AATCGACAGC
TTCGTGCGTT TGCGGCGCAT CCCGCTCAAC GAGAACGAGG TCAGGACGAT TGCCGAGGCG
CTGACCAAGG AGCTTGCCGG GTTCGGGCCG ATCGAGGACT TGCTCGCCGA TCCGCATGTC
GAGGACATCC TGATCAACGG CTACAACGAC ATCTACGTGT CGCGCCACGG GATCCTGGCC
AAGCTGCCGA TCCGCTTTAC CGATAACGCG CACCTGCTGC GTATCGTGCG ACGCATCCTT
GCGCCGATCG GCCGACGCCT GGACGAATCG AATCCGATGG TCGATGCGCG CCTGCCGGAC
GGCGGGCGTG TCAACGTGGT GATCGAGCCG CTGTCGATCG ACGGGCCGGT CGTGTCGATC
CGGAAATTCC GCAAGGATCC GCTCAAGCCG GCCGATCTGC TCGGCAACGG CACGTTCAAT
GCGGAGCTCG GCGCGCTGCT CGAGGCGGCG GTCGAGGCTC GCTGCAACAT CCTCGTGTCG
GGCGGCACGA GCTCGGGCAA GACTTCGCTG CTCAATGCGC TCGCGTTCCA CATTCCCGAG
CCGGAACGCG TCGTGACGAT CGAGGATACG GCCGAACTGT CGCTGAATCA CCCGCATGTC
GTGCGCCTCG AAAGCCGGCC CGGTGGCTTC GACGGCACCG GCGTCGTGTC GATTCGCGAT
TTGCTGCGCA ATACGTTGCG GATGCGCCCG GACCGGATCA TCGTGGGCGA AGTGCGCGGC
GGCGAGGTGC TCGAAATGCT GCAGGCCATG AACACGGGCC ACGACGGCTC GATGGGAACC
GTGCATGCGA GTTCGCCGCG CGAGTGCCTC TATCGTCTCG AGATGCTGGC CGGCTTCGCC
GGGTTCCAGG GCACCGAGTC GAGCCTGCGC CGGCAGATCG CGAACGCGAT CGACTTCATC
GTGCAGATTG GCCGTCTGTC CAACGGCCGG CGCCGGATCC TGTCGATTAC CGAGGTAACC
GGCCTGTCGG ACAACATCAT CGCGACGCAG GAACTGTATC GCTACGAGGC GCGCGTGACG
CCCGAAGGCG AAGAAGTCGA CACCTGGGAA TCGCTCGGCA TTCATCCGCA CTCGCCGAAG
CTCGCCCGCT TCCGTCAGAC ACTGCAGGGC GGCTTCGGCG GTAGCGGCGG CGGTGGCGGA
TTCGGCGGCG GATTCGGCCG CGGCGGCGGG GGTTTCAATG TATAG
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| Protein sequence | MAHDIQFADG AAPFSQSQQF HDIKNAAHEH LLTRIEELGA EFGRWSRQAI NQFVDLEIDS
FVRLRRIPLN ENEVRTIAEA LTKELAGFGP IEDLLADPHV EDILINGYND IYVSRHGILA
KLPIRFTDNA HLLRIVRRIL APIGRRLDES NPMVDARLPD GGRVNVVIEP LSIDGPVVSI
RKFRKDPLKP ADLLGNGTFN AELGALLEAA VEARCNILVS GGTSSGKTSL LNALAFHIPE
PERVVTIEDT AELSLNHPHV VRLESRPGGF DGTGVVSIRD LLRNTLRMRP DRIIVGEVRG
GEVLEMLQAM NTGHDGSMGT VHASSPRECL YRLEMLAGFA GFQGTESSLR RQIANAIDFI
VQIGRLSNGR RRILSITEVT GLSDNIIATQ ELYRYEARVT PEGEEVDTWE SLGIHPHSPK
LARFRQTLQG GFGGSGGGGG FGGGFGRGGG GFNV
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