Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1379 |
Symbol | |
ID | 4309603 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 1513898 |
End bp | 1515616 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 638149190 |
Product | pseudouridine synthase, Rsu |
Protein accession | YP_773271 |
Protein GI | 115351432 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGACAGATA TCCACGATAT TGAATCGTCC GCGCCTGCCG CACAGGCCGC GCGTGCCGAC GATGCGCCGG AGCAGGACGC TCCGGCCGCG GGTGGTGACG AGCGTCCCCG CCGCGGCCTG CGGCGCGGTC CGCGCAGCCT GATCGCGCGT CGCCGCGCGG CGGCCAAGTC GAAGGGCGCC GAGGGCGAGT CGCAGGACGG CGAAGGCGCA GACGCGCCGC CGGCCGAGGC CGCCGAAGCG CAGCCCGCAC GCGCACCGCG CAAGGAAGGC GCGGCCAGGG GCGGCCGCAA GCCGGCCGCC AAGCGTGAAG GTGCACCCAA GAGTGCGCAG GGCGGACAAG GCGGCCAGGG GCGGCGTGGC AGCCCGGCGA AAGCCGAGGG CGGCGCGGCG AAGGTCGAAG GCGATGCAGC GTCGCAGGAC GATCTGTTCG CCTATGTGAC GTCGCCGGCC TTCGACGCGG ACAACTCCGC GGGCGGCAGC GGCGTGCGTG CACCGATGCT GCGGCGCGGT CGTGCGCAGC CGACGAACAA GCGCGTGCTG TCGCCGGACG ACGACGCACC GAAGCTTCAC AAGGTGCTCG CGGAAGCCGG CATGGGCTCG CGCCGCGAAA TGGAAGAGCT GATCGTCGCC GGCCGCGTGT CGGTGAACGG TGAGCCCGCG CACATCGGCC AGCGCATCAT GCCGACCGAC CAGGTCCGCA TCAATGGCAA GCCGGTCAAG CGCAAGCTGC CGAACAAGCC GCCGCGCGTG CTGCTGTACC ACAAGCCGAC GGGCGAGATC GTCAGCCATG CGGATCCGGA AGGTCGTCCG TCGGTGTTCG ATCGCCTGCC GCCGATGAAG ACGGCGAAAT GGCTCGCGGT GGGCCGCCTC GACTTCAACA CCGAAGGTCT GCTGATGCTG ACCACGTCCG GCGATCTCGC GAACCGCTTC ATGCATCCGC GTTATAGCGT CGAGCGCGAG TATGCGGTGC GTGTCGTCGG CGAGCTGTCC GAAGGCATGC GGCAGAAGCT GCTGCATGGC GTCGAGCTCG ATGACGGCCC GGCGAACTTC CTGCGCATCC GCGACGGCGG CGGCGAAGGC ACGAACCACT GGTATCACGT TGCGCTGGCC GAAGGCCGCA ACCGCGAAGT GCGCCGTATG TTCGAAGCGG CCGGCCTGAT GGTGAGCCGC CTGATCCGTA CGCGCCACGG TCCGATCCCG CTGCCGCGCG GCCTGAAGCG CGGCCGTTGG GAAGAGCTCG ACGAGGCGCA GGTGCGCAAG CTGATGGCGA CCGTCGGCCT GAAGGCGCCG TCCGAGGAAA AGGGCAAGCG CGGTGGCAGT GGGCCGGCCG AGCGCCGCCA GCCGGATCCG ATGCAGACGT CGATGGGCTT CATCAGCCGT GAGCCGGTGC TGACCACGCA TGGTCAACTC GACCAGCCGC GTCGCGGTGG CGGTCGGCGC GGCGGCCCCG GCCTGCCGGG CCTGAGCGGC TACGGCAGCC TGCCGGTTTC GCCGTCGGGC CATGGCAACC GCTCGGGTGG CGGTCGCGAT GTCGACGGCA ATCGCGCGTC GTATGGCGCG GGTCCCAAGC GTGAAGGCGG CGCGGGCGCC AAGCGTGGCG GCAGCAAGGG CGGCGGTAAC CGCAACCCGA ACGGCAATCG CGCCGAAGGC GGCGGCAACA CCGGTGGTGG TGCACGCGGC GGTCAGCGCC CGCAGCGCAA TCGCTCGCGC GGTCGCTGA
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Protein sequence | MTDIHDIESS APAAQAARAD DAPEQDAPAA GGDERPRRGL RRGPRSLIAR RRAAAKSKGA EGESQDGEGA DAPPAEAAEA QPARAPRKEG AARGGRKPAA KREGAPKSAQ GGQGGQGRRG SPAKAEGGAA KVEGDAASQD DLFAYVTSPA FDADNSAGGS GVRAPMLRRG RAQPTNKRVL SPDDDAPKLH KVLAEAGMGS RREMEELIVA GRVSVNGEPA HIGQRIMPTD QVRINGKPVK RKLPNKPPRV LLYHKPTGEI VSHADPEGRP SVFDRLPPMK TAKWLAVGRL DFNTEGLLML TTSGDLANRF MHPRYSVERE YAVRVVGELS EGMRQKLLHG VELDDGPANF LRIRDGGGEG TNHWYHVALA EGRNREVRRM FEAAGLMVSR LIRTRHGPIP LPRGLKRGRW EELDEAQVRK LMATVGLKAP SEEKGKRGGS GPAERRQPDP MQTSMGFISR EPVLTTHGQL DQPRRGGGRR GGPGLPGLSG YGSLPVSPSG HGNRSGGGRD VDGNRASYGA GPKREGGAGA KRGGSKGGGN RNPNGNRAEG GGNTGGGARG GQRPQRNRSR GR
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