Gene Bamb_1173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1173 
Symbol 
ID4311178 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand+ 
Start bp1282899 
End bp1283561 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content62% 
IMG OID638148980 
Productribosomal RNA methyltransferase RrmJ/FtsJ 
Protein accessionYP_773065 
Protein GI115351226 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0293] 23S rRNA methylase 
TIGRFAM ID[TIGR00438] cell division protein FtsJ 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.436516 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAAA ACCGCTTCAA CCAGAACTGG CTGCACGACC ACATCAACGA CCCGTACGTC 
AAAATGGCGC AGCGGGAGGG CTATCGCGCG CGTGCCGCGT ACAAGCTGAA GGAAATCGAC 
GAGCAGGACA AGCTGATCCG TCCGGGCCAG GTGATCGTCG ATCTCGGCGC GACGCCGGGC 
AGCTGGAGCC AGTATGCCCG CAACAAGCTC GCGCAGGGCA AGAAGCGCGA CACGCAACGC 
GAAGGCGGCA TCGACGGCAC GATCATCGCG CTCGACCTGC TGCCGATGGA GCCGATCGCC 
GACGTCCACT TCATCCAGGG CGACTTCCGC GAGGACGACG TCCTCCGGCA GCTCGAAGAT 
GTGCTCGAAG GTCGCGCGGT GGACCTTGTT ATTTCCGACA TGGCCCCCAA CCTCTCCGGC 
GTAGCCTCGG CGGACGCAGC ACGCATCGAG CATCTGTGCG ATCTGGCGCT TGAATTCGCG 
CAGAACCATC TGAAGCCGGA TGGTGCGCTG CTCGTGAAGT GCTTTCACGG CAGCGGCTAC 
AGCCAGATCG TCGAGAAGTT CAAGCAGCAG TTTAAGGTGG TCGCGCCCCG CAAGCCGAAG 
GCGTCGCGCG ACAAATCGTC CGAAACGTTC ATTTTGGGCC GGCAGCTGAA GCAACCGCGG 
TGA
 
Protein sequence
MAKNRFNQNW LHDHINDPYV KMAQREGYRA RAAYKLKEID EQDKLIRPGQ VIVDLGATPG 
SWSQYARNKL AQGKKRDTQR EGGIDGTIIA LDLLPMEPIA DVHFIQGDFR EDDVLRQLED 
VLEGRAVDLV ISDMAPNLSG VASADAARIE HLCDLALEFA QNHLKPDGAL LVKCFHGSGY 
SQIVEKFKQQ FKVVAPRKPK ASRDKSSETF ILGRQLKQPR